SCN Proteipedia

Hg_chrom8_TN10mRNA_16055

Organism: Heterodera glycines Gene Locus: chr8:6907445-6912145 Feature type: polypeptide

Protein Sequence

Length: 1,177

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.948	1.186	0.881	0.234	1.997	1.634	0.597	0.722	1.303	1.309	1.365	1.199	0.92	0.392	1.595	0.68	0.808	0.747	0.065	0.575	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom8_TN10gene_15172	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	11-Not_described	1.000

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	nucleus	—	KRVK,KVKK,KKQSALRTIEKKECR,RKTNERAFQERERKT,KKRVRHLEAKIESKTRDR,KKKLFDAIEQLDDKKRTE,RKQKSLDTDKKDLEAKRRQ,KKAEMRLGQLNKTLSKKRS	—	—	—	—	—	—	0.000	—	—	0.739	0.083	0.008	0.406	0.139	0.112	0.089	0.001	0.088	0.071

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0012228	1.000	1.000	Hsc_gene_3649.t1	Hsc_gene_3649.t1	—	O95347.2 Structural maintenance of chromosomes protein 2 [Homo sapiens]	KAF7636433.1 Structural maintenance of chromosomes protein [Meloidogyne graminicola]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0005515\|GO:0005524\|GO:0005694\|GO:0016887\|GO:0051276	GO:0008150_0.924\|GO:0005575_0.895\|GO:0110165_0.889\|GO:0009987_0.886\|GO:0005622_0.848\|GO:0016020_0.793\|GO:0071840_0.781\|GO:0043226_0.776\|GO:0016043_0.767\|GO:0043229_0.754\|GO:0006996_0.713\|GO:0043227_0.684\|GO:0007049_0.664\|GO:0022402_0.664\|GO:0043228_0.648\|GO:0043232_0.648\|GO:0043231_0.636\|GO:0032991_0.625\|GO:0000280_0.609\|GO:0048285_0.609\|GO:0003674_0.589\|GO:0051276_0.570\|GO:0005488_0.551\|GO:0007059_0.532\|GO:0005737_0.505\|GO:0005634_0.502	IPR003395+3-140_302-1164+\|IPR010935+521-639_521-640+\|IPR024704+1-1171+\|IPR027120+1-173+\|IPR027417+1-204_1-1170_997-1177+\|IPR036277+479-686+	SM00968+521-640+	PF02463+3-140_302-1164+RecF/RecN/SMC_N_terminal_domain\|PF06470+521-639+SMC_proteins_Flexible_Hinge_Domain	—	PTHR43977+1-1174+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	244-468;735-934;1174-1177	3.000	1-243;469-734;935-1173	6qj1_A	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.497	134898.130	7.549	8.500	35.089	6.797	56.245	43.755	18.267	16.822	40.442

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	skyblue	grey	2082.335	2768.050	1893.301	2562.297	3538.576	2426.650	3541.085	1489.882	2087.127	712.431	1301.587

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.778	-0.249	0.545	0.434	-0.529	0.556	-0.809	1.392	—	—	2.888	—	—

No JSON data available for plots.

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