Hg_chrom8_TN10mRNA_16057
Organism: Heterodera glycines Gene Locus: chr8:6917215-6917548 Feature type: polypeptideProtein Sequence
Length: 85
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 2.189 | 0.547 | 0.0 | 1.217 | 0.784 | 0.603 | 0.56 | 2.353 | 0.523 | 0.954 | 0.891 | 3.46 | 0.327 | 0.226 | 4.322 | 0.504 | 0.964 | 0.178 | 1.81 | 0.346 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_15174
|
— | — |
1.222
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
7-Not_Clustered
|
0.325
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
extracellular
|
— |
RKAARAKAGNTAKSRRAER,RARAAKAEKRQAQLRKAARAKAGNTAKSRR
|
— | — | — | — | — | — |
0.000
|
— | — |
0.380
|
0.410
|
0.025
|
0.352
|
0.062
|
0.049
|
0.191
|
0.054
|
0.088
|
0.457
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000931
|
5.000
|
1.000
|
Hsc_gene_16852.t1
|
Hsc_gene_16852.t1;Hsc_gene_19599.t1;Hsc_gene_19603.t1
|
— | — | — |
MBW4663932
|
inf
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-85
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.807
|
9901.670
|
12.510
|
21.000
|
36.471
|
9.412
|
50.588
|
49.412
|
31.765
|
4.706
|
41.176
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
brown
|
151.541
|
226.467
|
241.248
|
170.644
|
222.793
|
112.388
|
177.224
|
314.949
|
130.071
|
15.797
|
64.772
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
-0.546
|
-0.390
|
0.353
|
-0.974
|
0.667
|
1.389
|
-0.691
|
— | — |
4.240
|
8.708
|
— |
No JSON data available for plots.