Hg_chrom8_TN10mRNA_16063
Organism: Heterodera glycines Gene Locus: chr8:6925846-6928512 Feature type: polypeptideProtein Sequence
Length: 618
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.734 | 1.054 | 0.941 | 0.725 | 1.321 | 1.245 | 0.289 | 0.971 | 1.043 | 1.815 | 0.834 | 1.237 | 1.393 | 0.778 | 1.189 | 1.156 | 0.928 | 0.907 | 0.622 | 1.047 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_15179
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
14-Not_Clustered
|
0.763
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.615
|
0.317
|
0.010
|
0.495
|
0.104
|
0.101
|
0.201
|
0.197
|
0.019
|
0.060
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004809
|
2.000
|
1.000
|
Hsc_gene_3670.t1
|
Hsc_gene_3670.t1;Hsc_gene_5542.t1
|
— | — |
KAH7717068.1 Protein R05D11.9 [Aphelenchus avenae]
|
No
|
-0.070
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003723|GO:0006400
|
GO:0005575_0.922|GO:0110165_0.918|GO:0005622_0.864|GO:0016020_0.858|GO:0003674_0.837|GO:0043226_0.824|GO:0043229_0.800|GO:0005488_0.793|GO:0043227_0.772|GO:0043231_0.746|GO:0097159_0.682|GO:0003676_0.668|GO:0003723_0.659|GO:0005634_0.623|GO:0031974_0.586|GO:0043233_0.586|GO:0031981_0.581|GO:0070013_0.581|GO:0005654_0.566
|
IPR004114+473-583_487-583_497-582+|IPR040183+353-601_446-583+
|
SM00981+487-583+
|
PF02926+497-582+THUMP_domain
|
— |
PTHR13452+353-601+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
594-618
|
1.000
|
1-593
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.541
|
71112.540
|
5.846
|
-5.000
|
26.375
|
11.327
|
49.515
|
50.485
|
13.269
|
13.107
|
44.337
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
purple
|
3161.446
|
5181.781
|
2709.818
|
2784.017
|
3010.750
|
2481.946
|
3746.407
|
2448.377
|
1224.597
|
4526.719
|
3111.524
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.165
|
-1.033
|
0.148
|
0.081
|
-0.264
|
0.603
|
— |
0.754
|
-2.000
|
— | — | — | — |
No JSON data available for plots.