Hg_chrom8_TN10mRNA_16065
Organism: Heterodera glycines Gene Locus: chr8:6928652-6930446 Feature type: polypeptideProtein Sequence
Length: 321
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.978 | 0.869 | 0.963 | 0.645 | 1.09 | 1.038 | 0.593 | 0.935 | 1.177 | 1.473 | 0.944 | 1.283 | 1.558 | 1.018 | 1.081 | 0.979 | 0.766 | 0.944 | 0.959 | 1.008 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_15180
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.367
|
0.124
|
0.025
|
0.507
|
0.235
|
0.122
|
0.168
|
0.013
|
0.030
|
0.123
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — |
Hsc_gene_3659.t1;Hsc_gene_5540.t1;Hsc_gene_5541.t1
|
— |
A8QCY3.1 Eukaryotic translation initiation factor 3 subunit H [Brugia malayi]
|
KAH7714270.1 Mov34/MPN/PAD-1 family protein [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003729|GO:0003743|GO:0005515|GO:0005737|GO:0005849|GO:0005852|GO:0008233|GO:0008237|GO:0031124
|
GO:0008150_0.908|GO:0009987_0.776|GO:0005575_0.740|GO:0110165_0.736|GO:0005622_0.683|GO:0008152_0.634|GO:0044237_0.611|GO:0009058_0.604|GO:0043170_0.589|GO:0044249_0.583|GO:0009059_0.566|GO:0010467_0.554|GO:0043226_0.521|GO:0044238_0.516|GO:0005737_0.511|GO:0016020_0.502
|
IPR000555+4-147_17-114+|IPR016706+214-314_224-318+|IPR027524+1-219+|IPR045810+132-219+
|
SM00232+4-147+
|
PF01398+17-114+JAB1/Mov34/MPN/PAD-1_ubiquitin_protease|PF13869+214-314+Nucleotide_hydrolase|PF19445+132-219+C-terminal_region_of_eIF3h
|
— |
PTHR13047+224-318+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-321
|
2j8q_B
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.629
|
36270.740
|
7.013
|
2.000
|
25.234
|
12.150
|
44.548
|
55.452
|
13.396
|
11.838
|
47.352
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — |
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — | — | — | — | — | — |
No JSON data available for plots.