Hg_chrom8_TN10mRNA_16066
Organism: Heterodera glycines Gene Locus: chr8:6930613-6935687 Feature type: polypeptideProtein Sequence
Length: 982
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.876 | 0.805 | 1.185 | 0.597 | 1.205 | 0.992 | 0.643 | 1.527 | 1.131 | 1.335 | 0.926 | 1.438 | 1.414 | 0.822 | 1.164 | 1.018 | 0.952 | 0.926 | 0.783 | 0.749 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_15181
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— |
KKRK,RKKR
|
— | — | — | — | — | — |
0.000
|
— | — |
0.381
|
0.287
|
0.008
|
0.699
|
0.193
|
0.271
|
0.246
|
0.100
|
0.215
|
0.151
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002511
|
3.000
|
1.000
|
Hsc_gene_5539.t1
|
— | — |
P48053.2 Uncharacterized protein C05D11.1 [Caenorhabditis elegans]
|
KAI1712135.1 peptidase m16 inactive domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0046872
|
GO:0005575_0.866|GO:0110165_0.856|GO:0005622_0.802|GO:0005737_0.739|GO:0008150_0.689|GO:0016020_0.616|GO:0043226_0.577|GO:0043229_0.557|GO:0043227_0.536|GO:0009987_0.523|GO:0043231_0.514
|
IPR007863+129-267+|IPR011249+2-166_189-440_776-946+
|
— |
PF05193+129-267+Peptidase_M16_inactive_domain
|
G3DSA:3.30.830.10:FF:000015+1-169+Putative_zinc_metalloprotease
|
PTHR43016+1-963+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-982
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.505
|
110856.240
|
6.296
|
-4.000
|
28.615
|
11.711
|
48.880
|
51.120
|
14.868
|
13.747
|
47.963
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — |
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — | — | — | — | — | — |
No JSON data available for plots.