Hg_chrom8_TN10mRNA_16069
Organism: Heterodera glycines Gene Locus: chr8:6943598-6944634 Feature type: polypeptideProtein Sequence
Length: 261
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.891 | 1.158 | 0.975 | 0.793 | 1.533 | 1.474 | 0.365 | 0.766 | 1.022 | 1.139 | 1.161 | 1.578 | 1.171 | 0.663 | 1.173 | 1.04 | 1.005 | 1.103 | 0.0 | 0.789 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_15184
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
11-Not_Clustered
|
0.511
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.663
|
0.411
|
0.008
|
0.626
|
0.015
|
0.010
|
0.058
|
0.028
|
0.007
|
0.053
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012232
|
1.000
|
1.000
|
Hsc_gene_5542.t1
|
Hsc_gene_5542.t1
|
— | — |
KAI1719551.1 THUMP domain-containing protein [Ditylenchus destructor]
|
No
|
-0.090
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003723|GO:0006400
|
GO:0005575_0.922|GO:0110165_0.915|GO:0005622_0.880|GO:0016020_0.839|GO:0043226_0.825|GO:0003674_0.810|GO:0043229_0.809|GO:0005488_0.807|GO:0043227_0.771|GO:0043231_0.742|GO:0097159_0.688|GO:0003676_0.679|GO:0003723_0.665|GO:0005634_0.651|GO:0031974_0.600|GO:0043233_0.600|GO:0070013_0.596|GO:0031981_0.593|GO:0005654_0.573
|
IPR004114+116-226_130-226_140-225+|IPR040183+4-244_89-225+
|
SM00981+130-226+
|
PF02926+140-225+THUMP_domain
|
— |
PTHR13452+4-244+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
238-261
|
1.000
|
1-237
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.504
|
29641.700
|
6.146
|
-1.000
|
29.502
|
8.429
|
53.640
|
46.360
|
14.943
|
14.559
|
47.510
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
saddlebrown
|
686.185
|
625.580
|
541.570
|
588.966
|
820.085
|
734.091
|
886.041
|
755.409
|
423.091
|
827.838
|
654.375
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.438
|
-0.224
|
0.230
|
0.446
|
— |
0.283
|
— |
0.374
|
— | — | — | — | — |
No JSON data available for plots.