Hg_chrom8_TN10mRNA_16071
Organism: Heterodera glycines Gene Locus: chr8:6949125-6952462 Feature type: polypeptideProtein Sequence
Length: 514
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.543 | 1.448 | 1.132 | 0.47 | 1.167 | 0.499 | 0.672 | 0.681 | 1.34 | 1.683 | 1.179 | 1.602 | 1.297 | 0.823 | 1.072 | 0.889 | 0.957 | 1.032 | 0.898 | 0.687 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_15186
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
1-Not_Clustered
|
0.723
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.286
|
0.301
|
0.082
|
0.725
|
0.211
|
0.426
|
0.276
|
0.081
|
0.364
|
0.146
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004810
|
1.000
|
2.000
|
Hsc_gene_3660.t1;Hsc_gene_3660.t2
|
Hsc_gene_3660.t1;Hsc_gene_3660.t2;Hsc_gene_3661.t1
|
— |
Q07130.2 UTP--glucose-1-phosphate uridylyltransferase [Bos taurus]
|
KAI3410137.1 UTP--glucose-1-phosphate uridylyltransferase [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003983|GO:0006011|GO:0070569
|
GO:0008150_0.872|GO:0005575_0.841|GO:0110165_0.834|GO:0009987_0.737|GO:0005622_0.722|GO:0016020_0.684|GO:0005737_0.683|GO:0003674_0.631|GO:0043226_0.596|GO:0008152_0.588|GO:0043229_0.578|GO:0044238_0.570|GO:0003824_0.540
|
IPR002618+70-479+|IPR016267+22-514_60-511_117-417+|IPR029044+31-401_67-487+
|
— |
PF01704+70-479+UTP--glucose-1-phosphate_uridylyltransferase
|
G3DSA:2.160.10.10:FF:000001+402-514+UTP--glucose-1-phosphate_uridylyltransferase|G3DSA:3.90.550.10:FF:000002+42-401+UTP--glucose-1-phosphate_uridylyltransferase
|
PTHR43511+60-511+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-514
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.689
|
58288.350
|
7.071
|
2.500
|
27.626
|
9.533
|
47.860
|
52.140
|
14.397
|
13.230
|
47.276
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
lightyellow
|
purple
|
4904.037
|
3991.518
|
4375.002
|
4142.561
|
5719.604
|
7402.377
|
8175.148
|
7865.110
|
3039.974
|
3548.434
|
3330.523
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
-0.084
|
— |
0.434
|
0.386
|
0.153
|
— | — | — | — | — | — | — |
No JSON data available for plots.