Hg_chrom8_TN10mRNA_16072
Organism: Heterodera glycines Gene Locus: chr8:6952532-6953374 Feature type: polypeptideProtein Sequence
Length: 165
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.057 | 0.564 | 1.212 | 0.418 | 1.313 | 1.088 | 0.722 | 0.303 | 1.212 | 1.229 | 0.918 | 1.426 | 1.01 | 1.282 | 1.237 | 1.039 | 0.397 | 1.286 | 1.865 | 0.535 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_15187
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
8-Not_Clustered
|
0.886
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
peroxisomal_targeting_signal
|
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.470
|
0.539
|
0.140
|
0.533
|
0.056
|
0.213
|
0.104
|
0.404
|
0.176
|
0.157
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012234
|
1.000
|
1.000
|
Hsc_gene_3662.t1
|
Hsc_gene_3662.t1
|
— |
C5CRQ4.1 Cyanate hydratase [Variovorax paradoxus S110]
|
MCG8520462.1 cyanase [Pseudomonadales bacterium]
|
HTH60184
|
0.050
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003677|GO:0008824|GO:0009439
|
GO:0003674_0.835|GO:0003824_0.732|GO:0008150_0.710|GO:0016829_0.658|GO:0008824_0.650|GO:0016840_0.650|GO:0009987_0.647|GO:0008152_0.591|GO:0044237_0.564|GO:0044281_0.521|GO:0005575_0.503|GO:0009056_0.501
|
IPR003712+92-165_96-163_96-165+|IPR008076+1-165_15-165_20-164_24-165_32-47_52-69_100-114_118-134_150-160+|IPR010982+17-95_18-93+|IPR036581+96-164_98-165+|IPR048564+21-89+
|
SM01116+92-165+
|
PF02560+96-163+Cyanate_lyase_C-terminal_domain|PF21291+21-89+Cyanate_hydratase,_N-terminal
|
— |
PTHR34186+20-164+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-20
|
1.000
|
21-165
|
8c7e_T
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.533
|
18403.090
|
4.866
|
-3.500
|
27.273
|
8.485
|
43.636
|
56.364
|
12.727
|
14.545
|
50.303
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
magenta
|
222.381
|
496.880
|
215.067
|
68.240
|
203.428
|
337.611
|
242.450
|
452.632
|
31.789
|
192.958
|
123.885
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.438
|
-3.001
|
-1.546
|
1.543
|
0.746
|
-0.467
|
0.316
|
-0.756
|
— | — | — | — | — |
No JSON data available for plots.