Hg_chrom8_TN10mRNA_16073
Organism: Heterodera glycines Gene Locus: chr8:6953492-6955471 Feature type: polypeptideProtein Sequence
Length: 308
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.057 | 0.68 | 0.413 | 0.224 | 0.595 | 0.749 | 0.928 | 0.812 | 0.866 | 1.272 | 0.689 | 1.337 | 2.074 | 0.874 | 1.458 | 1.391 | 1.118 | 1.181 | 0.749 | 1.337 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_15188
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
19-Eggs_Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
transmembrane_domain|mitochondrial_transit_peptide
|
mitochondrion
|
— | — |
55-75
|
0.996
|
20-60
|
0.995
|
— | — |
0.000
|
— | — |
0.109
|
0.883
|
0.080
|
0.108
|
0.196
|
0.199
|
0.212
|
0.173
|
0.189
|
0.108
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012235
|
1.000
|
1.000
|
Hsc_gene_3663.t1
|
Hsc_gene_3663.t1
|
— |
Q8R0Y8.1 Mitochondrial coenzyme A transporter SLC25A42 [Mus musculus]
|
KAI1701953.1 mitochondrial carrier protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0055085
|
GO:0005575_0.862|GO:0110165_0.854|GO:0016020_0.811|GO:0008150_0.776|GO:0005622_0.744|GO:0005737_0.744|GO:0043226_0.731|GO:0043229_0.720|GO:0043227_0.704|GO:0043231_0.698|GO:0009987_0.666|GO:0003674_0.519
|
IPR002067+27-40_40-54_84-104_132-150_175-193_220-242+|IPR018108+22-109_23-111_117-202_117-205_211-297_211-299+|IPR023395+19-300_22-293+
|
— |
PF00153+23-111_117-205_211-299+Mitochondrial_carrier_protein
|
— |
PTHR24089+17-297+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-9
|
1.000
|
10-308
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.787
|
34166.430
|
10.508
|
20.500
|
19.156
|
14.610
|
41.558
|
58.442
|
13.312
|
5.844
|
51.623
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
turquoise
|
615.287
|
860.876
|
404.334
|
420.427
|
603.058
|
693.272
|
1132.709
|
620.409
|
140.915
|
810.538
|
523.557
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.322
|
-1.171
|
0.167
|
0.488
|
0.216
|
0.719
|
-0.267
|
1.012
|
— | — | — | — | — |
No JSON data available for plots.