Hg_chrom8_TN10mRNA_16076
Organism: Heterodera glycines Gene Locus: chr8:6964486-6966078 Feature type: polypeptideProtein Sequence
Length: 367
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.887 | 1.077 | 0.991 | 0.846 | 0.999 | 0.699 | 1.103 | 1.226 | 1.574 | 1.215 | 0.867 | 1.763 | 0.984 | 0.838 | 1.223 | 0.856 | 0.759 | 1.115 | 0.21 | 0.721 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_15191
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
6-pJ2_J3_J4_Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
mitochondrial_transit_peptide
|
mitochondrion
|
— | — |
6-26
|
0.996
|
— | — | — | — |
0.000
|
— | — |
0.087
|
0.940
|
0.024
|
0.260
|
0.042
|
0.062
|
0.051
|
0.042
|
0.054
|
0.020
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012238
|
1.000
|
1.000
|
Hsc_gene_3667.t1
|
Hsc_gene_3667.t1
|
— |
Q93714.3 Probable isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial [Caenorhabditis elegans]
|
KAI1708319.1 isocitrate/isopropylmalate dehydrogenase domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0000287|GO:0006099|GO:0016616|GO:0051287
|
GO:0005575_0.790|GO:0110165_0.779|GO:0005622_0.695|GO:0008150_0.695|GO:0005737_0.653|GO:0016020_0.646|GO:0009987_0.618|GO:0043226_0.603|GO:0003674_0.593|GO:0043229_0.584|GO:0043227_0.566|GO:0008152_0.556|GO:0043231_0.554|GO:0044237_0.528
|
IPR004434+36-364+|IPR019818+256-275+|IPR024084+36-360_37-359+
|
SM01329+36-360+
|
PF00180+37-359+Isocitrate/isopropylmalate_dehydrogenase
|
G3DSA:3.40.718.10:FF:000003+22-364+Isocitrate_dehydrogenase_[NAD]_subunit,_mitochondrial
|
PTHR11835+34-363+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-367
|
6ke3_G
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.773
|
40154.240
|
7.616
|
5.500
|
25.613
|
8.719
|
43.597
|
56.403
|
14.169
|
11.444
|
51.771
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
cyan
|
1316.182
|
626.863
|
1483.980
|
2130.393
|
2199.143
|
2056.066
|
1571.527
|
1918.533
|
432.719
|
938.816
|
721.917
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.014
|
1.628
|
0.630
|
— | — |
-0.378
|
— | — | — |
2.475
|
— | — | — |
No JSON data available for plots.