Hg_chrom8_TN10mRNA_16077
Organism: Heterodera glycines Gene Locus: chr8:6966677-6973046 Feature type: polypeptideProtein Sequence
Length: 850
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.971 | 1.094 | 1.005 | 0.406 | 0.961 | 0.995 | 0.742 | 1.176 | 0.837 | 1.367 | 0.517 | 0.83 | 1.34 | 1.063 | 1.224 | 1.193 | 0.849 | 1.176 | 1.719 | 1.003 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_15192
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
3-Not_Clustered
|
0.768
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
cell_membrane|lysosome_vacuole
|
— |
RKRRK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.169
|
0.014
|
0.003
|
0.246
|
0.304
|
0.593
|
0.480
|
0.007
|
0.739
|
0.081
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012239
|
1.000
|
1.000
|
Hsc_gene_3668.t1
|
Hsc_gene_3668.t1
|
— |
Q7JKY3.1 Dipeptidyl peptidase family member 1 [Caenorhabditis elegans]
|
KAI1708318.1 prolyl oligopeptidase family domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0006508|GO:0008236
|
GO:0008150_0.878|GO:0005575_0.808|GO:0110165_0.805|GO:0003674_0.743|GO:0009987_0.698|GO:0065007_0.592|GO:0050789_0.581|GO:0016020_0.549|GO:0071944_0.518
|
IPR001375+651-849+|IPR002469+167-546+|IPR029058+603-850_611-848+|IPR050278+46-849+
|
— |
PF00326+651-849+Prolyl_oligopeptidase_family|PF00930+167-546+Dipeptidyl_peptidase_IV_(DPP_IV)_N-terminal_region
|
G3DSA:3.40.50.1820:FF:000003+602-850+Dipeptidyl_peptidase_4
|
PTHR11731+46-849+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-850
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.662
|
95043.400
|
6.011
|
-6.000
|
23.059
|
12.824
|
45.176
|
54.824
|
11.765
|
11.294
|
52.824
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
blue
|
3645.234
|
1278.634
|
5190.991
|
2465.691
|
1776.505
|
2738.614
|
2279.087
|
2477.345
|
1297.385
|
8147.285
|
5211.614
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.793
|
0.810
|
-0.966
|
-0.505
|
0.639
|
-0.255
|
-0.250
|
— |
-2.768
|
— | — | — | — |
No JSON data available for plots.