Hg_chrom8_TN10mRNA_16082
Organism: Heterodera glycines Gene Locus: chr8:6984927-6987366 Feature type: polypeptideProtein Sequence
Length: 431
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.782 | 0.917 | 1.012 | 0.4 | 0.58 | 1.309 | 0.884 | 2.32 | 0.722 | 1.348 | 0.422 | 0.819 | 1.933 | 0.982 | 1.373 | 1.226 | 0.875 | 1.125 | 1.071 | 0.887 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_15197
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
6-Not_Clustered
|
0.912
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
lysosome_vacuole|golgi_apparatus
|
— |
KKHTFQLKPRRRRGT
|
16-36
|
0.990
|
— | — | — | — |
0.000
|
— | — |
0.137
|
0.120
|
0.015
|
0.245
|
0.560
|
0.731
|
0.909
|
0.004
|
0.156
|
0.262
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012240
|
1.000
|
1.000
|
Hsc_gene_5545.t1
|
Hsc_gene_5545.t1
|
— |
O97860.1 Tartrate-resistant acid phosphatase type 5 [Oryctolagus cuniculus]
|
KAF7639725.1 Metallophos domain-containing protein [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003993|GO:0016787
|
GO:0005575_0.810|GO:0110165_0.807|GO:0003674_0.781|GO:0008150_0.684|GO:0016020_0.606|GO:0050896_0.544|GO:0005622_0.533|GO:0009987_0.526|GO:0005737_0.509|GO:0003824_0.501
|
IPR004843+89-320+|IPR024927+88-409+|IPR029052+83-429_87-405+|IPR051558+81-420+
|
— |
PF00149+89-320+Calcineurin-like_phosphoesterase
|
— |
PTHR10161+81-420+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
397-431
|
1.000
|
1-396
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.804
|
48435.730
|
8.128
|
12.000
|
23.202
|
16.009
|
46.172
|
53.828
|
14.153
|
9.049
|
51.276
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
grey
|
898.612
|
669.781
|
803.864
|
1052.237
|
1542.723
|
1725.517
|
1100.117
|
1272.452
|
634.210
|
393.261
|
496.525
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
0.515
|
0.497
|
0.520
|
0.176
|
-0.639
|
-0.543
|
— | — | — | — | — | — |
No JSON data available for plots.