Hg_chrom8_TN10mRNA_16083
Organism: Heterodera glycines Gene Locus: chr8:6987500-6990617 Feature type: polypeptideProtein Sequence
Length: 464
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.952 | 1.103 | 0.392 | 1.04 | 1.042 | 1.713 | 0.847 | 2.263 | 0.479 | 1.223 | 1.012 | 0.887 | 0.838 | 1.119 | 1.232 | 1.755 | 0.777 | 0.588 | 0.995 | 0.254 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_15198
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
7-Not_Clustered
|
0.590
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
KRKH,KRHKWRAENGGRGKRERE
|
— | — |
7-88
|
0.947
|
— | — |
0.000
|
— | — |
0.883
|
0.099
|
0.010
|
0.288
|
0.026
|
0.024
|
0.051
|
0.015
|
0.027
|
0.025
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012241
|
1.000
|
1.000
|
Hsc_gene_5546.t1
|
Hsc_gene_5546.t1
|
— |
Q9NQ03.3 Transcriptional repressor scratch 2 [Homo sapiens]
|
XP_024506165.1 Zinc finger, C2H2 domain and Zinc finger C2H2-type/integrase DNA-binding domain and Zinc finger, C2H2-like domain-containing protein [Strongyloides ratti];CEF66965.1 Zinc finger, C2H2 domain and Zinc finger C2H2-type/integrase DNA-binding domain and Zinc finger, C2H2-like domain-containing protein [Strongyloides ratti]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.825|GO:0065007_0.816|GO:0050789_0.809|GO:0009987_0.801|GO:0050794_0.801|GO:0008152_0.787|GO:0019222_0.787|GO:0031323_0.787|GO:0044237_0.787|GO:0044238_0.777|GO:0080090_0.777|GO:0009058_0.773|GO:0009059_0.773|GO:0010467_0.773|GO:0043170_0.773|GO:0044249_0.773|GO:0005575_0.771|GO:0006139_0.769|GO:0016070_0.769|GO:0032774_0.769|GO:0034654_0.769|GO:0090304_0.769|GO:0141187_0.769|GO:0009889_0.765|GO:0031326_0.764|GO:0110165_0.764|GO:0060255_0.763|GO:0010556_0.759|GO:0010468_0.758|GO:0019219_0.751|GO:0005622_0.750|GO:0006351_0.750|GO:0043226_0.750|GO:0043229_0.750|GO:0051252_0.750|GO:0006355_0.748|GO:2001141_0.748|GO:0016020_0.732|GO:0043227_0.713|GO:0005634_0.712|GO:0043231_0.712|GO:0006366_0.701|GO:0048519_0.699|GO:0006357_0.698|GO:0048523_0.684|GO:0009892_0.670|GO:0031324_0.670|GO:0010605_0.664|GO:0045934_0.664|GO:0051253_0.664|GO:0009890_0.663|GO:0010558_0.663|GO:0031327_0.663|GO:0045892_0.663|GO:1902679_0.663|GO:0003674_0.661|GO:0005488_0.659|GO:0003676_0.654|GO:0097159_0.654|GO:0000122_0.647|GO:0003677_0.622|GO:0043565_0.622|GO:0032502_0.620|GO:0048856_0.620|GO:0003690_0.616|GO:1990837_0.616|GO:0032501_0.611|GO:0007275_0.598|GO:0048731_0.569|GO:0030154_0.562|GO:0048869_0.562
|
IPR013087+308-330_308-335_310-330_337-359_337-364_338-359_339-359_363-385_363-390_365-385_391-413_391-418_393-413_419-441_419-447_420-441_421-442+|IPR036236+308-359_363-413_399-444+|IPR050527+10-443+
|
SM00355+308-330_337-359_363-385_391-413_419-441+
|
PF00096+308-330_338-359_363-385_393-413_420-441+Zinc_finger,_C2H2_type
|
G3DSA:3.30.160.60:FF:000043+363-386+Scratch_family_zinc_finger_2|G3DSA:3.30.160.60:FF:000446+308-331+Zinc_finger_protein|G3DSA:3.30.160.60:FF:001465+387-416+Zinc_finger_protein_560
|
PTHR24388+10-443+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-1;130-301;440-464
|
2.000
|
2-129;302-439
|
3w5k_B
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.940
|
50877.250
|
9.943
|
30.500
|
25.647
|
9.698
|
54.095
|
45.905
|
17.241
|
8.405
|
51.940
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
149.371
|
209.120
|
249.053
|
96.566
|
36.348
|
31.733
|
63.157
|
178.558
|
1.382
|
328.261
|
188.170
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
-1.252
|
-1.259
|
-1.447
|
— |
1.000
|
2.392
|
-1.360
|
— |
6.459
|
— | — | — |
No JSON data available for plots.