Hg_chrom8_TN10mRNA_16085
Organism: Heterodera glycines Gene Locus: chr8:7001735-7003278 Feature type: polypeptideProtein Sequence
Length: 240
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.357 | 1.26 | 0.682 | 0.287 | 1.181 | 1.923 | 0.893 | 1.667 | 0.926 | 0.845 | 0.631 | 1.961 | 1.62 | 0.721 | 1.02 | 1.131 | 0.478 | 1.199 | 0.0 | 0.49 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_15200
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
19-Eggs_Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
mitochondrion
|
— | — | — | — |
23-58
|
0.971
|
— | — |
0.001
|
— | — |
0.240
|
0.678
|
0.056
|
0.355
|
0.339
|
0.493
|
0.442
|
0.005
|
0.151
|
0.193
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012242
|
1.000
|
1.000
|
Hsc_gene_5548.t1
|
Hsc_gene_5548.t1
|
— | — |
KAF7638149.1 t-SNARE coiled-coil homology domain-containing protein [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016020|GO:0016192
|
GO:0008150_0.932|GO:0005575_0.929|GO:0110165_0.922|GO:0009987_0.874|GO:0016020_0.832|GO:0005622_0.830|GO:0003674_0.826|GO:0005488_0.801|GO:0043226_0.785|GO:0071944_0.778|GO:0051179_0.769|GO:0005515_0.768|GO:0043229_0.761|GO:0006810_0.755|GO:0051234_0.755|GO:0005737_0.753|GO:0005886_0.752|GO:0008152_0.752|GO:0044237_0.747|GO:0071840_0.745|GO:0016043_0.739|GO:0043227_0.720|GO:0051641_0.709|GO:0006996_0.702|GO:0044085_0.701|GO:0043231_0.699|GO:0009056_0.698|GO:0022607_0.695|GO:0033036_0.694|GO:0051649_0.694|GO:0070727_0.691|GO:0008104_0.690|GO:0003824_0.686|GO:0046907_0.685|GO:0061024_0.685|GO:0043933_0.684|GO:0044248_0.684|GO:0016192_0.682|GO:0016787_0.678|GO:0070925_0.677|GO:0051640_0.676|GO:0019899_0.675|GO:0048193_0.675|GO:0061919_0.675|GO:0006914_0.674|GO:0010256_0.674|GO:0061025_0.674|GO:0000045_0.670|GO:0006888_0.670|GO:0007030_0.670|GO:0007033_0.670|GO:0008641_0.670|GO:0016236_0.670|GO:0016240_0.670|GO:0016462_0.670|GO:0016740_0.670|GO:0016746_0.670|GO:0016755_0.670|GO:0016817_0.670|GO:0016818_0.670|GO:0016874_0.670|GO:0016877_0.670|GO:0016887_0.670|GO:0017111_0.670|GO:0019777_0.670|GO:0019778_0.670|GO:0019786_0.670|GO:0019787_0.670|GO:0022406_0.670|GO:0022411_0.670|GO:0032984_0.670|GO:0034497_0.670|GO:0061650_0.670|GO:0061651_0.670|GO:0061659_0.670|GO:0061660_0.670|GO:0097111_0.670|GO:0097352_0.670|GO:0140056_0.670|GO:0140096_0.670|GO:0140657_0.670|GO:1905037_0.670|GO:0060090_0.659|GO:0030674_0.657|GO:0032991_0.656|GO:0000149_0.650|GO:0005484_0.650|GO:0019902_0.650|GO:0019903_0.650|GO:0005773_0.603|GO:0012505_0.584|GO:0031090_0.579|GO:0098588_0.563|GO:0098796_0.560|GO:0005739_0.556|GO:0005783_0.551|GO:0031984_0.547|GO:0005774_0.545|GO:0000421_0.540|GO:0005776_0.540|GO:0005789_0.540|GO:0005793_0.540|GO:0031201_0.540|GO:0042175_0.540|GO:0044232_0.540|GO:0044233_0.540|GO:0098827_0.540
|
IPR000727+92-159_97-159+|IPR010989+73-152+|IPR045242+56-166+
|
SM00397+92-159+
|
— | — |
PTHR19957+56-166+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
39-162;222-240
|
2.000
|
1-38;163-221
|
2nps_B
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.668
|
26226.510
|
6.496
|
0.000
|
23.333
|
10.833
|
47.083
|
52.917
|
12.500
|
10.833
|
51.667
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
midnightblue
|
532.938
|
702.389
|
508.610
|
509.950
|
628.592
|
725.775
|
864.011
|
712.824
|
384.667
|
298.546
|
335.455
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.696
|
-0.599
|
— |
0.269
|
0.222
|
0.263
|
— |
0.420
|
— | — | — | — | — |
No JSON data available for plots.