Hg_chrom8_TN10mRNA_16086
Organism: Heterodera glycines Gene Locus: chr8:7005737-7009324 Feature type: polypeptideProtein Sequence
Length: 634
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.082 | 0.55 | 0.774 | 0.87 | 0.815 | 0.93 | 0.845 | 0.868 | 0.981 | 1.428 | 0.43 | 1.763 | 1.796 | 0.971 | 1.223 | 1.239 | 1.189 | 0.956 | 0.971 | 0.696 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_15201
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
2-pJ2_J3_J4_Female
|
0.986
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
cell_membrane
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.093
|
0.074
|
0.020
|
0.155
|
0.270
|
0.252
|
0.267
|
0.102
|
0.664
|
0.135
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012243
|
1.000
|
1.000
|
Hsc_gene_5549.t1
|
— | — |
Q61983.2 Sodium-dependent phosphate transport protein 1 [Mus musculus]
|
KAI1710320.1 major facilitator superfamily domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0022857|GO:0055085
|
GO:0008150_0.960|GO:0009987_0.883|GO:0005575_0.838|GO:0110165_0.833|GO:0003674_0.763|GO:0051179_0.747|GO:0006810_0.739|GO:0051234_0.739|GO:0016020_0.719|GO:0071944_0.712|GO:0005886_0.697|GO:0055085_0.681|GO:0005215_0.605|GO:0022857_0.605|GO:0015711_0.508|GO:0005622_0.505
|
IPR011701+192-509+|IPR020846+102-577+|IPR036259+98-571_169-352_380-577+
|
— |
PF07690+192-509+Major_Facilitator_Superfamily
|
— |
PTHR45757+81-603+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-88;584-634
|
1.000
|
89-583
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.707
|
69676.130
|
6.993
|
3.500
|
19.716
|
11.830
|
41.640
|
58.360
|
10.568
|
9.148
|
52.839
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
turquoise
|
492.678
|
242.191
|
378.375
|
520.817
|
1018.685
|
1024.537
|
812.056
|
315.309
|
25.094
|
519.655
|
307.700
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.412
|
0.968
|
0.571
|
0.936
|
— |
-0.325
|
-1.809
|
1.508
|
-4.503
|
— | — | — | — |
No JSON data available for plots.