Hg_chrom8_TN10mRNA_16087
Organism: Heterodera glycines Gene Locus: chr8:7009673-7012781 Feature type: polypeptideProtein Sequence
Length: 544
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.983 | 0.855 | 1.003 | 0.254 | 1.287 | 1.461 | 0.853 | 1.838 | 0.49 | 0.944 | 0.446 | 1.081 | 0.408 | 1.803 | 2.814 | 0.893 | 1.085 | 0.473 | 1.131 | 0.378 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_15202
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
10-Pre_planta
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
cell_membrane
|
— |
KKKR,KRHR,RGRPPPRP,RRRKRRNRNRRRRRRERVR,RKRRNRNRRRRRRERVRQK,RRNRNRRRRRRERVRQKHR
|
— | — |
13-42
|
0.993
|
— | — |
0.090
|
— | — |
0.282
|
0.073
|
0.012
|
0.422
|
0.324
|
0.183
|
0.303
|
0.008
|
0.431
|
0.272
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012244
|
1.000
|
1.000
|
Hsc_gene_5550.t1
|
Hsc_gene_5550.t1
|
— | — |
CAD2150608.1 unnamed protein product [Meloidogyne enterolobii]
|
No
|
-0.030
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-6;76-544
|
1.000
|
7-75
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.914
|
61580.420
|
10.712
|
29.000
|
33.640
|
7.904
|
55.882
|
44.118
|
20.404
|
13.235
|
50.919
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
347.542
|
1058.721
|
559.074
|
437.709
|
294.211
|
314.307
|
181.041
|
579.861
|
58.708
|
192.120
|
134.944
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.151
|
-1.412
|
-0.244
|
-0.604
|
— |
-0.788
|
0.784
|
-1.541
|
— | — | — | — | — |
No JSON data available for plots.