SCN Proteipedia

Hg_chrom8_TN10mRNA_16093

Organism: Heterodera glycines Gene Locus: chr8:7026860-7030280 Feature type: polypeptide

Protein Sequence

Length: 580

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.942	1.283	0.878	0.357	2.126	1.547	0.369	1.293	0.958	1.747	1.228	1.42	1.006	0.398	1.513	0.813	0.594	0.653	0.398	0.304	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom8_TN10gene_15208	—	—	1.111	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	2.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	24-J3_Female	1.000

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	cytoplasm	—	RKETRKLEDQVGQYKAKVR	—	—	—	—	—	—	0.000	—	—	0.376	0.100	0.004	0.711	0.045	0.130	0.126	0.017	0.147	0.044

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0012248	1.000	1.000	Hsc_gene_5556.t1	Hsc_gene_5556.t1	—	—	KAI3412016.1 hypothetical protein GPALN_002068 [Globodera pallida]	No	0.160

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	—	GO:0008150_0.949\|GO:0005575_0.930\|GO:0110165_0.929\|GO:0009987_0.911\|GO:0005622_0.910\|GO:0065007_0.865\|GO:0043226_0.857\|GO:0050789_0.857\|GO:0050794_0.827\|GO:0003674_0.824\|GO:0043229_0.823\|GO:0071840_0.810\|GO:0005488_0.809\|GO:0016043_0.806\|GO:0005515_0.801\|GO:0050896_0.797\|GO:0051179_0.790\|GO:0032501_0.779\|GO:0051716_0.777\|GO:0051234_0.775\|GO:0032502_0.770\|GO:0048856_0.770\|GO:0051641_0.764\|GO:0006996_0.761\|GO:0048518_0.757\|GO:0048522_0.747\|GO:0051649_0.746\|GO:0048519_0.745\|GO:0007154_0.743\|GO:0023052_0.741\|GO:0007275_0.738\|GO:0048523_0.734\|GO:0007017_0.729\|GO:0033036_0.725\|GO:0070727_0.725\|GO:0007165_0.724\|GO:0044085_0.722\|GO:0007010_0.720\|GO:0008104_0.720\|GO:0010646_0.718\|GO:0032879_0.716\|GO:0023051_0.715\|GO:0000226_0.713\|GO:0022607_0.711\|GO:0048583_0.710\|GO:0051128_0.710\|GO:0051640_0.710\|GO:0051656_0.710\|GO:0007018_0.709\|GO:0007049_0.706\|GO:0022402_0.706\|GO:0043228_0.704\|GO:0009966_0.703\|GO:0000280_0.702\|GO:0048285_0.702\|GO:0035556_0.700\|GO:0070925_0.700\|GO:0033365_0.698\|GO:1902531_0.698\|GO:0043232_0.697\|GO:0000278_0.693\|GO:0010647_0.693\|GO:0023056_0.693\|GO:0043933_0.693\|GO:0060341_0.693\|GO:0140014_0.693\|GO:1903047_0.693\|GO:0051130_0.692\|GO:0033043_0.691\|GO:0007059_0.690\|GO:0048584_0.690\|GO:0051726_0.689\|GO:0065003_0.689\|GO:0051276_0.688\|GO:0032880_0.687\|GO:0044087_0.687\|GO:0009967_0.686\|GO:0098813_0.686\|GO:0007051_0.685\|GO:0009790_0.684\|GO:0010564_0.684\|GO:1902115_0.683\|GO:0051129_0.682\|GO:0010639_0.681\|GO:0044848_0.681\|GO:0140694_0.681\|GO:1902533_0.681\|GO:0000070_0.680\|GO:0000819_0.680\|GO:0022403_0.680\|GO:0007346_0.679\|GO:0065004_0.679\|GO:0071824_0.679\|GO:0000279_0.678\|GO:0009792_0.678\|GO:0010638_0.678\|GO:0033044_0.678\|GO:0044770_0.678\|GO:0051225_0.678\|GO:1903829_0.678\|GO:0043254_0.677\|GO:0044772_0.677\|GO:1901987_0.677\|GO:0000075_0.676\|GO:0010948_0.676\|GO:0044089_0.676\|GO:0045786_0.676\|GO:0045787_0.676\|GO:0050000_0.676\|GO:0051303_0.676\|GO:1901988_0.676\|GO:0007052_0.675\|GO:0007093_0.675\|GO:0034502_0.675\|GO:0045930_0.675\|GO:0051310_0.675\|GO:1901990_0.675\|GO:1901991_0.675\|GO:1902850_0.675\|GO:0005856_0.674\|GO:0090068_0.674\|GO:2001252_0.674\|GO:0008017_0.673\|GO:0008092_0.673\|GO:0008608_0.673\|GO:0015631_0.673\|GO:0000022_0.670\|GO:0000073_0.670\|GO:0000087_0.670\|GO:0000088_0.670\|GO:0007079_0.670\|GO:0007080_0.670\|GO:0007088_0.670\|GO:0007091_0.670\|GO:0007094_0.670\|GO:0010695_0.670\|GO:0010696_0.670\|GO:0010965_0.670\|GO:0030071_0.670\|GO:0031023_0.670\|GO:0031334_0.670\|GO:0031577_0.670\|GO:0033045_0.670\|GO:0033046_0.670\|GO:0033047_0.670\|GO:0033048_0.670\|GO:0034501_0.670\|GO:0034508_0.670\|GO:0044784_0.670\|GO:0045839_0.670\|GO:0045841_0.670\|GO:0051231_0.670\|GO:0051300_0.670\|GO:0051304_0.670\|GO:0051305_0.670\|GO:0051306_0.670\|GO:0051315_0.670\|GO:0051324_0.670\|GO:0051382_0.670\|GO:0051383_0.670\|GO:0051783_0.670\|GO:0051784_0.670\|GO:0051983_0.670\|GO:0051985_0.670\|GO:0051988_0.670\|GO:0061804_0.670\|GO:0071173_0.670\|GO:0071174_0.670\|GO:0071459_0.670\|GO:0090230_0.670\|GO:0090231_0.670\|GO:0090232_0.670\|GO:0090234_0.670\|GO:0090235_0.670\|GO:0090266_0.670\|GO:0090267_0.670\|GO:0090268_0.670\|GO:0090307_0.670\|GO:0098763_0.670\|GO:0110100_0.670\|GO:1901970_0.670\|GO:1901976_0.670\|GO:1901978_0.670\|GO:1902099_0.670\|GO:1902100_0.670\|GO:1902117_0.670\|GO:1902423_0.670\|GO:1903083_0.670\|GO:1903504_0.670\|GO:1905047_0.670\|GO:1905340_0.670\|GO:1905342_0.670\|GO:1905561_0.670\|GO:1905818_0.670\|GO:1905819_0.670\|GO:1905820_0.670\|GO:1905822_0.670\|GO:1905824_0.670\|GO:1990891_0.670\|GO:2000816_0.670\|GO:2001251_0.670\|GO:0099080_0.641\|GO:0015630_0.628\|GO:0099081_0.610\|GO:0099512_0.610\|GO:0099513_0.603\|GO:0005874_0.592\|GO:0005694_0.566\|GO:0000793_0.557\|GO:0000775_0.556\|GO:0098687_0.556\|GO:0000776_0.550\|GO:0000779_0.550	—	—	—	—	—

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	222-298	2.000	1-221;299-580	—	—

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.663	67136.320	6.054	-4.500	35.690	7.759	56.552	43.448	18.103	17.586	38.276

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	grey60	grey	809.063	233.537	353.813	669.674	783.309	700.606	1052.391	444.870	1377.034	917.550	1114.472

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	0.368	1.382	1.030	0.194	-0.146	0.598	-0.770	1.390	—	—	—	—	—

No JSON data available for plots.

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