Hg_chrom8_TN10mRNA_16095
Organism: Heterodera glycines Gene Locus: chr8:7033091-7034772 Feature type: polypeptideProtein Sequence
Length: 214
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.869 | 0.869 | 1.105 | 0.0 | 2.57 | 1.558 | 0.501 | 0.234 | 0.727 | 1.137 | 0.991 | 3.299 | 0.909 | 0.539 | 2.384 | 0.467 | 1.226 | 0.496 | 0.0 | 0.275 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_15210
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
25-Not_Clustered
|
0.565
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
lysosome_vacuole
|
— |
RKDRALLLLKRKRFQ,RKTADEERTKEEKEPKRRR
|
64-84
|
0.989
|
— | — | — | — |
0.000
|
— | — |
0.137
|
0.494
|
0.019
|
0.230
|
0.205
|
0.646
|
0.228
|
0.059
|
0.292
|
0.061
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012250
|
1.000
|
1.000
|
Hsc_gene_5558.t1
|
Hsc_gene_5558.t1
|
— |
Q5ZL55.3 Charged multivesicular body protein 6 [Gallus gallus]
|
KAI1713872.1 snf7 domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0007034
|
GO:0005575_0.934|GO:0110165_0.927|GO:0005622_0.910|GO:0008150_0.889|GO:0009987_0.868|GO:0043226_0.844|GO:0016020_0.811|GO:0043229_0.755|GO:0043227_0.729|GO:0005737_0.689|GO:0051179_0.681|GO:0071944_0.681|GO:0051234_0.670|GO:0006810_0.664|GO:0005886_0.634|GO:0016192_0.630|GO:0043231_0.628|GO:0071840_0.619|GO:0016043_0.605|GO:0006996_0.555|GO:0051641_0.519|GO:0051649_0.504
|
IPR005024+23-181_24-179+
|
— |
PF03357+24-179+Snf7
|
— |
PTHR22761+23-181+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-31;117-214
|
1.000
|
32-116
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.803
|
25104.240
|
4.876
|
-6.500
|
40.187
|
4.673
|
60.748
|
39.252
|
18.692
|
21.495
|
38.318
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
3753.469
|
3635.794
|
4653.035
|
1653.958
|
1516.890
|
1538.667
|
3281.328
|
3109.141
|
9857.930
|
1757.175
|
5228.927
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.126
|
-1.274
|
-1.383
|
-0.157
|
— |
1.105
|
0.907
|
— |
2.368
|
-2.428
|
— | — | — |
No JSON data available for plots.