Hg_chrom8_TN10mRNA_16096
Organism: Heterodera glycines Gene Locus: chr8:7041833-7045667 Feature type: polypeptideProtein Sequence
Length: 350
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.963 | 0.864 | 0.571 | 0.296 | 0.667 | 1.685 | 1.054 | 2.429 | 0.825 | 1.12 | 0.476 | 1.345 | 1.032 | 1.264 | 1.749 | 1.388 | 0.937 | 0.866 | 0.44 | 0.504 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_15211
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
13-Not_described
|
0.996
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_export_signal
|
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.523
|
0.239
|
0.017
|
0.726
|
0.086
|
0.137
|
0.088
|
0.142
|
0.181
|
0.053
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012251
|
1.000
|
1.000
|
Hsc_gene_5561.t2
|
Hsc_gene_5561.t1;Hsc_gene_5561.t2
|
— |
Q17QM8.1 Dual specificity protein phosphatase 14 [Bos taurus]
|
KAI1713845.1 dual specificity phosphatase, catalytic domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0006470|GO:0016311
|
GO:0008150_0.835|GO:0003674_0.818|GO:0009987_0.738|GO:0005575_0.731|GO:0110165_0.716|GO:0005622_0.636|GO:0003824_0.597|GO:0016787_0.585|GO:0016788_0.572|GO:0140096_0.563|GO:0016791_0.561|GO:0042578_0.561|GO:0016020_0.558|GO:0008152_0.554|GO:0044237_0.544|GO:0004721_0.537|GO:0065007_0.530|GO:0050789_0.520|GO:0050794_0.514
|
IPR000340+18-146+|IPR000387+70-128+|IPR016130+91-101+|IPR020422+9-146_9-149+|IPR029021+7-175_8-151+|IPR052103+7-317+
|
SM00195+9-146+
|
PF00782+18-146+Dual_specificity_phosphatase,_catalytic_domain
|
— |
PTHR45961+7-317+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
156-350
|
1.000
|
1-155
|
2wgp_B
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.919
|
38354.320
|
10.897
|
24.500
|
23.714
|
10.857
|
49.429
|
50.571
|
16.571
|
7.143
|
52.571
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
974.940
|
2120.626
|
2307.628
|
1095.777
|
615.257
|
695.537
|
777.627
|
2832.452
|
179.080
|
214.215
|
199.157
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
-1.090
|
-0.967
|
-0.864
|
0.191
|
— |
1.930
|
-1.726
|
— | — | — | — | — |
No JSON data available for plots.