Hg_chrom8_TN10mRNA_16097
Organism: Heterodera glycines Gene Locus: chr8:7046512-7049046 Feature type: polypeptideProtein Sequence
Length: 508
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.053 | 0.641 | 0.644 | 0.95 | 1.05 | 0.909 | 0.609 | 0.689 | 0.35 | 1.463 | 0.746 | 0.579 | 1.64 | 1.476 | 2.129 | 1.069 | 0.968 | 1.342 | 0.606 | 0.058 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_15212
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
7-Not_Clustered
|
0.517
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide
|
endoplasmic_reticulum
|
— |
RRRR,KKRKRRKTEDK,KRRRKVILRRKLLRK,RKGATAGDLQQKKKSG,RRKLLRKGATAGDLQQKKK,RKLLRKGATAGDLQQKKKS,RRTDRGEGVQLGRRMARRR
|
53-74
|
0.999
|
1-23
|
0.976
|
— | — |
0.003
|
— | — |
0.416
|
0.114
|
0.029
|
0.250
|
0.470
|
0.097
|
0.198
|
0.074
|
0.169
|
0.189
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012252
|
1.000
|
1.000
|
Hsc_gene_5562.t1
|
Hsc_gene_5562.t1
|
— | — |
CAD2172188.1 unnamed protein product [Meloidogyne enterolobii]
|
EAK5214118
|
0.200
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
115-320;480-508
|
2.000
|
1-114;321-479
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.750
|
56463.280
|
10.724
|
31.500
|
26.575
|
8.268
|
46.260
|
53.740
|
16.732
|
9.843
|
53.150
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
58.604
|
97.441
|
185.836
|
54.586
|
29.263
|
25.052
|
80.800
|
75.639
|
26.156
|
31.042
|
28.948
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.701
|
-0.973
|
-1.657
|
-0.928
|
— |
1.701
|
1.494
|
— | — | — | — | — | — |
No JSON data available for plots.