Hg_chrom8_TN10mRNA_16100
Organism: Heterodera glycines Gene Locus: chr8:7059397-7060925 Feature type: polypeptideProtein Sequence
Length: 250
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.977 | 0.465 | 0.945 | 1.103 | 0.467 | 0.923 | 0.714 | 2.2 | 0.889 | 1.351 | 0.485 | 1.176 | 1.889 | 1.0 | 1.714 | 1.371 | 0.459 | 0.909 | 2.769 | 0.824 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_15215
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
24-J3_Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
extracellular
|
— |
RRRR
|
43-83
|
0.995
|
28-68
|
1.000
|
— | — |
0.000
|
— | — |
0.319
|
0.347
|
0.355
|
0.365
|
0.258
|
0.048
|
0.150
|
0.314
|
0.085
|
0.415
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002513
|
3.000
|
1.000
|
Hsc_gene_3732.t1
|
Hsc_gene_3732.t1
|
— |
P17330.1 Glyceraldehyde-3-phosphate dehydrogenase 3 [Caenorhabditis elegans]
|
KHJ74794.1 glyceraldehyde 3-phosphate dehydrogenase domain protein [Oesophagostomum dentatum]
|
No
|
-0.090
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016620
|
GO:0005575_0.836|GO:0008150_0.785|GO:0110165_0.777|GO:0003674_0.709|GO:0005622_0.630|GO:0009987_0.600|GO:0016020_0.598|GO:0005737_0.579|GO:0008152_0.543|GO:0044238_0.522|GO:0043226_0.506
|
IPR020829+175-229+|IPR020831+21-34_175-248_185-200+
|
— |
PF02800+175-229+Glyceraldehyde_3-phosphate_dehydrogenase,_C-terminal_domain
|
— |
PTHR10836+175-248+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-14
|
1.000
|
15-250
|
4k9d_H
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.839
|
28612.910
|
9.281
|
14.500
|
24.000
|
17.600
|
42.000
|
58.000
|
16.000
|
8.000
|
48.400
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
grey
|
317.153
|
38.382
|
69.133
|
71.416
|
145.139
|
74.249
|
225.915
|
37.858
|
129.678
|
1042.001
|
651.005
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.618
|
0.760
|
— |
0.993
|
-0.954
|
1.617
|
-1.080
|
2.723
|
— | — | — | — | — |
No JSON data available for plots.