SCN Proteipedia

Hg_chrom8_TN10mRNA_16102

Organism: Heterodera glycines Gene Locus: chr8:7064253-7065938 Feature type: polypeptide

Protein Sequence

Length: 150

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.233	1.085	0.727	0.69	0.444	0.513	0.952	0.333	1.926	1.712	0.505	3.922	2.407	1.41	0.952	0.857	1.093	0.808	0.513	0.98	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom8_TN10gene_15217	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	24-J3_Female	0.998

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	transmembrane_domain	endoplasmic_reticulum\|golgi_apparatus	—	—	—	—	—	—	—	—	0.000	—	—	0.101	0.304	0.032	0.064	0.770	0.455	0.709	0.006	0.276	0.024

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0012253	1.000	1.000	Hsc_gene_5563.t1	Hsc_gene_5563.t1	—	Q9VQP9.3 Putative oligosaccharyltransferase complex subunit CG9662 [Drosophila melanogaster]	KAI1717870.1 OST3 / OST6 family, transporter family domain-containing protein [Ditylenchus destructor]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0006486\|GO:0008250	GO:0008150_0.935\|GO:0005575_0.903\|GO:0110165_0.896\|GO:0009987_0.877\|GO:0016020_0.868\|GO:0071944_0.818\|GO:0005886_0.812\|GO:0005622_0.782\|GO:0005737_0.782\|GO:0043226_0.757\|GO:0008152_0.748\|GO:0043227_0.748\|GO:0043229_0.745\|GO:0043231_0.745\|GO:0044237_0.736\|GO:0009058_0.731\|GO:0044238_0.730\|GO:0005773_0.727\|GO:1901135_0.717\|GO:0019538_0.716\|GO:0043170_0.716\|GO:0044249_0.711\|GO:1901137_0.702\|GO:0009059_0.699\|GO:0012505_0.696\|GO:0070085_0.694\|GO:0009100_0.693\|GO:0036211_0.692\|GO:0043412_0.692\|GO:0043413_0.690\|GO:0006486_0.688\|GO:0009101_0.688\|GO:0006487_0.679\|GO:0018279_0.673\|GO:0031090_0.666\|GO:0005783_0.632\|GO:0032991_0.601\|GO:0098796_0.598\|GO:0031984_0.596\|GO:0042175_0.592\|GO:0005789_0.590\|GO:0098827_0.590\|GO:0140534_0.555\|GO:1902494_0.555\|GO:1990234_0.546\|GO:0008250_0.540	IPR021149+30-147+\|IPR042416+4-149+	—	PF04756+30-147+OST3_/_OST6_family,_transporter_family	—	PTHR13160+4-149+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	—	—	1.000	1-150	9ygy_J	STRUCT_HOMOLOG

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.864	16991.240	8.252	2.500	15.333	13.333	34.667	65.333	8.667	6.667	46.000

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	grey60	grey	795.366	354.719	570.832	793.976	933.159	954.904	1159.302	651.219	296.834	1225.308	827.390

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	0.456	1.025	0.585	0.202	—	0.289	-0.657	0.974	—	—	—	—	—

No JSON data available for plots.

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