Hg_chrom8_TN10mRNA_16114
Organism: Heterodera glycines Gene Locus: chr8:7130211-7133736 Feature type: polypeptideProtein Sequence
Length: 696
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.42 | 0.401 | 0.287 | 0.149 | 0.551 | 3.61 | 1.232 | 2.802 | 0.16 | 0.602 | 0.566 | 2.197 | 0.599 | 2.57 | 0.557 | 1.17 | 0.754 | 0.631 | 0.332 | 0.718 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_15229
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
20-Not_Clustered
|
0.879
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
KQKKKKKEKEP
|
— | — | — | — | — | — |
0.000
|
— | — |
0.908
|
0.063
|
0.012
|
0.343
|
0.056
|
0.028
|
0.046
|
0.003
|
0.049
|
0.073
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004817
|
1.000
|
2.000
|
Hsc_gene_5578.t1;Hsc_gene_5578.t2
|
Hsc_gene_5578.t1
|
— | — |
KAF7638134.1 ARID domain-containing protein [Meloidogyne graminicola]
|
No
|
-0.130
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003677|GO:0006338|GO:0016514|GO:0035060
|
GO:0005575_0.899|GO:0110165_0.897|GO:0005622_0.845|GO:0016020_0.813|GO:0043226_0.800|GO:0008150_0.785|GO:0043229_0.783|GO:0065007_0.764|GO:0050789_0.758|GO:0009987_0.751|GO:0043227_0.730|GO:0005634_0.717|GO:0043231_0.717|GO:0050794_0.693|GO:0003674_0.690|GO:0005488_0.690|GO:0008152_0.632|GO:0019222_0.632|GO:0043170_0.632|GO:0060255_0.632|GO:0044238_0.628|GO:0080090_0.628|GO:0031323_0.625|GO:0044237_0.625|GO:0006139_0.612|GO:0016070_0.612|GO:0019219_0.612|GO:0051252_0.612|GO:0090304_0.612|GO:0009058_0.608|GO:0009889_0.608|GO:0031326_0.608|GO:0044249_0.608|GO:0009059_0.604|GO:0010467_0.604|GO:0010468_0.604|GO:0010556_0.604|GO:0032774_0.593|GO:0034654_0.593|GO:0141187_0.593|GO:0006351_0.591|GO:0006355_0.591|GO:2001141_0.591|GO:0006366_0.578|GO:0048518_0.578|GO:0003676_0.576|GO:0048522_0.576|GO:0097159_0.576|GO:0009893_0.545|GO:0010604_0.545|GO:0031325_0.535|GO:0045935_0.532|GO:0051254_0.532|GO:0006357_0.528|GO:0009891_0.526|GO:0031328_0.522|GO:0010557_0.520|GO:0003677_0.511|GO:0032502_0.507|GO:0048856_0.507|GO:1902680_0.502
|
IPR001606+483-576_484-577_486-571+|IPR021906+263-691+|IPR036431+465-597_474-583+
|
SM00501+484-577+|SM01014+480-572+
|
PF01388+486-571+ARID/BRIGHT_DNA_binding_domain
|
— |
PTHR12656+263-691+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-473;580-696
|
1.000
|
474-579
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.971
|
73417.690
|
9.733
|
30.500
|
16.954
|
10.632
|
45.546
|
54.454
|
12.069
|
4.885
|
56.609
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
773.737
|
1976.660
|
1193.080
|
731.445
|
516.335
|
571.212
|
278.354
|
342.342
|
1120.711
|
441.031
|
732.323
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.958
|
-1.572
|
-0.597
|
-0.533
|
— |
-1.029
|
-0.843
|
— | — | — | — | — | — |
No JSON data available for plots.