SCN Proteipedia

Hg_chrom8_TN10mRNA_16115

Organism: Heterodera glycines Gene Locus: chr8:7135938-7144746 Feature type: polypeptide

Protein Sequence

Length: 1,930

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	1.386	1.289	0.65	0.429	0.786	2.139	0.796	1.554	0.484	0.91	0.479	1.341	0.72	1.435	1.11	1.414	1.062	0.887	0.518	0.625	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom8_TN10gene_15230	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	10-Not_Clustered	0.833

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	nucleus	—	KKKK,KRSR,KRPPITKNDNEDTSGKLKK	—	—	43-64	0.957	—	—	0.000	—	—	0.799	0.125	0.009	0.388	0.092	0.040	0.043	0.053	0.101	0.023

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0004812	2.000	1.000	Hsc_gene_5579.t1	—	—	Q8IN94.1 Trithorax group protein osa [Drosophila melanogaster]	KAF7638134.1 ARID domain-containing protein [Meloidogyne graminicola]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0004601\|GO:0006338\|GO:0016514\|GO:0035060	GO:0005575_0.938\|GO:0110165_0.932\|GO:0005622_0.857\|GO:0008150_0.850\|GO:0016020_0.839\|GO:0009987_0.802\|GO:0065007_0.791\|GO:0043226_0.789\|GO:0043229_0.780\|GO:0050789_0.778\|GO:0003674_0.760\|GO:0005488_0.743\|GO:0043227_0.719\|GO:0043231_0.701\|GO:0005634_0.660\|GO:0043228_0.655\|GO:0043232_0.655\|GO:0050794_0.642\|GO:0097159_0.627\|GO:0032991_0.623\|GO:0032502_0.616\|GO:0048856_0.616\|GO:0003676_0.610\|GO:0032501_0.588\|GO:0007275_0.571\|GO:0003677_0.563\|GO:0000785_0.559\|GO:0005694_0.559\|GO:0140513_0.558\|GO:1902494_0.553\|GO:0048731_0.550\|GO:0008152_0.546\|GO:0043170_0.546\|GO:0019222_0.544\|GO:0070603_0.540\|GO:1904949_0.540\|GO:0031323_0.538\|GO:0044237_0.538\|GO:0044238_0.536\|GO:0080090_0.536\|GO:0048869_0.533\|GO:0009058_0.531\|GO:0060255_0.531\|GO:0007399_0.530\|GO:0030154_0.528\|GO:0009059_0.521\|GO:0044249_0.521\|GO:0009889_0.515\|GO:0031326_0.515\|GO:0010467_0.514\|GO:0010468_0.507\|GO:0010556_0.507\|GO:0006139_0.504\|GO:0034654_0.504\|GO:0016070_0.503\|GO:0090304_0.503	IPR016024+1368-1535+\|IPR019794+1056-1067+\|IPR021906+142-1199+\|IPR033388+1130-1193_1287-1483+	—	PF12031+1130-1193_1287-1483+SWI/SNF-like_complex_subunit_BAF250/Osa	—	PTHR12656+142-1199+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-238;322-667;797-842;892-1073;1162-1302;1537-1613;1656-1930	6.000	239-321;668-796;843-891;1074-1161;1303-1536;1614-1655	—	—

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.896	207339.280	8.057	36.000	20.000	8.497	50.259	49.741	11.710	8.290	58.653

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	black	tan	3031.531	6862.991	3987.645	2731.550	2033.427	2298.058	1597.403	1871.641	5405.581	1190.242	2996.816

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-1.012	-1.466	-0.438	-0.457	0.191	-0.515	-0.402	—	2.072	—	—	—	—

No JSON data available for plots.

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