Hg_chrom8_TN10mRNA_16116
Organism: Heterodera glycines Gene Locus: chr8:7146535-7148025 Feature type: polypeptideProtein Sequence
Length: 111
(Signal peptide: 1-27)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.838 | 0.629 | 0.983 | 2.796 | 0.45 | 0.462 | 0.644 | 0.45 | 1.802 | 2.557 | 0.41 | 0.53 | 1.251 | 1.04 | 0.919 | 0.901 | 0.295 | 1.365 | 0.693 | 0.795 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_15231
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — |
Hsc_gene_5582
|
— |
26-Not_Clustered
|
0.853
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
membrane_bound
|
signal_peptide|transmembrane_domain
|
cell_membrane|lysosome_vacuole
|
— | — | — | — | — | — |
1-27
|
0.994
|
1.000
|
1.000
|
1.000
|
0.113
|
0.021
|
0.040
|
0.220
|
0.258
|
0.748
|
0.239
|
0.015
|
0.630
|
0.208
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003557
|
2.000
|
1.000
|
Hsc_gene_5582.t2
|
Hsc_gene_3671.t1;Hsc_gene_5582.t1;Hsc_gene_5582.t2
|
— | — |
KAI1713891.1 protein SUP-1 [Ditylenchus destructor]
|
No
|
0.150
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.939|GO:0110165_0.932|GO:0071944_0.903|GO:0005886_0.895|GO:0016020_0.895|GO:0030054_0.588|GO:0045202_0.579|GO:0098590_0.575|GO:0042995_0.560|GO:0120025_0.559|GO:0043005_0.553|GO:0044297_0.549|GO:0036477_0.548|GO:0043025_0.546|GO:0032809_0.540|GO:0044298_0.540
|
IPR022559+12-110_58-94+
|
— |
PF10853+58-94+Protein_of_unknown_function_(DUF2650)
|
— |
PTHR34149+12-110+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-111
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.546
|
12159.640
|
5.711
|
-0.500
|
16.216
|
9.009
|
28.829
|
71.171
|
8.108
|
8.108
|
51.351
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
purple
|
lightyellow
|
1841.549
|
699.948
|
879.229
|
1437.280
|
2005.638
|
3559.663
|
1197.981
|
1251.924
|
506.994
|
3539.659
|
2239.945
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
0.901
|
0.816
|
0.449
|
0.843
|
-1.564
|
-1.613
|
— |
-2.890
|
— | — | — | — |