Hg_chrom8_TN10mRNA_16118
Organism: Heterodera glycines Gene Locus: chr8:7153942-7158645 Feature type: polypeptideProtein Sequence
Length: 664
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.243 | 1.086 | 0.794 | 0.987 | 0.653 | 0.85 | 0.789 | 1.205 | 0.669 | 1.384 | 0.388 | 1.595 | 1.213 | 1.622 | 1.199 | 1.42 | 0.765 | 1.072 | 1.043 | 0.266 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_15233
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
25-Eggs_Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
transmembrane_domain
|
cell_membrane
|
— |
KRRS,RRRR
|
42-65
|
0.941
|
— | — | — | — |
0.000
|
— | — |
0.168
|
0.143
|
0.019
|
0.253
|
0.263
|
0.190
|
0.205
|
0.004
|
0.705
|
0.139
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002514
|
1.000
|
3.000
|
Hsc_gene_3673.t1;Hsc_gene_3673.t2;Hsc_gene_3673.t3
|
Hsc_gene_3673.t1;Hsc_gene_3673.t2;Hsc_gene_3673.t3
|
— | — |
KAI1713899.1 amiloride-sensitive sodium channel domain-containing protein [Ditylenchus destructor]
|
No
|
-0.020
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
489-664
|
1.000
|
1-488
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.892
|
71271.500
|
7.530
|
9.000
|
19.127
|
9.036
|
41.717
|
58.283
|
10.843
|
8.283
|
59.337
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
grey
|
127.458
|
172.981
|
130.119
|
109.010
|
58.687
|
61.558
|
146.782
|
48.260
|
7.230
|
279.430
|
162.773
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.640
|
-0.803
|
— |
-0.924
|
— |
1.263
|
-0.459
|
1.748
|
-5.370
|
4.128
|
— | — | — |
No JSON data available for plots.