Hg_chrom8_TN10mRNA_16119
Organism: Heterodera glycines Gene Locus: chr8:7159840-7160606 Feature type: polypeptideProtein Sequence
Length: 110
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.529 | 0.423 | 1.488 | 4.075 | 0.606 | 0.466 | 1.082 | 0.909 | 1.212 | 0.614 | 1.515 | 1.07 | 0.758 | 0.874 | 1.484 | 0.519 | 0.745 | 0.964 | 0.0 | 1.872 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_15234
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
5-pJ2_J3_J4
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.687
|
0.278
|
0.051
|
0.517
|
0.235
|
0.103
|
0.094
|
0.013
|
0.099
|
0.051
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012261
|
1.000
|
1.000
|
Hsc_gene_3674.t1
|
Hsc_gene_3674.t1
|
— |
P83870.1 PHD finger-like domain-containing protein 5A [Mus musculus]
|
KAI1713429.1 PHF5-like protein domain-containing protein [Ditylenchus destructor];KAI1724632.1 PHF5-like protein [Ditylenchus destructor]
|
No
|
-0.030
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0000398
|
GO:0005575_0.805|GO:0008150_0.797|GO:0110165_0.793|GO:0009987_0.730|GO:0005622_0.690|GO:0043226_0.640|GO:0016020_0.616|GO:0043229_0.608|GO:0043227_0.597|GO:0043231_0.581|GO:0005634_0.518|GO:0008152_0.512|GO:0043170_0.512|GO:0009058_0.501|GO:0009059_0.501|GO:0010467_0.501|GO:0044237_0.501|GO:0044249_0.501
|
IPR005345+1-104_1-109_1-110+
|
— |
PF03660+1-104+PHF5-like_protein
|
— |
PTHR13120+1-109+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-110
|
5ife_D
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.624
|
12379.410
|
8.299
|
7.000
|
30.909
|
10.909
|
42.727
|
57.273
|
19.091
|
11.818
|
54.545
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
turquoise
|
882.722
|
633.614
|
544.253
|
1375.926
|
1455.799
|
1050.399
|
727.699
|
466.397
|
312.453
|
1282.285
|
866.642
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.450
|
0.982
|
1.447
|
— |
-0.456
|
-0.518
|
-1.274
|
0.784
|
— | — | — | — | — |
No JSON data available for plots.