Hg_chrom8_TN10mRNA_16120
Organism: Heterodera glycines Gene Locus: chr8:7160758-7162306 Feature type: polypeptideProtein Sequence
Length: 186
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.125 | 0.875 | 0.587 | 0.556 | 0.986 | 0.965 | 0.704 | 2.419 | 1.075 | 0.872 | 1.874 | 1.265 | 0.896 | 0.724 | 2.085 | 0.614 | 0.617 | 1.14 | 0.827 | 0.474 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_15235
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
5-pJ2_J3_J4
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— |
KRAIRFLENVREKKE,LVKVKKESKKKQRRQLA,RKAQAQAWGTTQGRWPKK,KKDVVAKPAGALVKVKKE
|
36-56
|
0.811
|
— | — | — | — |
0.000
|
— | — |
0.542
|
0.143
|
0.025
|
0.671
|
0.170
|
0.020
|
0.046
|
0.006
|
0.063
|
0.027
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012262
|
1.000
|
1.000
|
Hsc_gene_3675.t1
|
Hsc_gene_3675.t1
|
— |
Q9BL19.1 Large ribosomal subunit protein uL22 [Caenorhabditis elegans]
|
KAH7723700.1 60S ribosomal protein L17 [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003735|GO:0005840|GO:0006412|GO:0015934
|
GO:0005575_0.857|GO:0110165_0.853|GO:0005622_0.739|GO:0005737_0.663|GO:0043226_0.632|GO:0043229_0.632|GO:0003674_0.620|GO:0005829_0.540|GO:0043228_0.501|GO:0043232_0.501
|
IPR001063+17-152_19-153+|IPR005721+2-155_5-179_6-155+|IPR018260+128-152+|IPR036394+3-185_5-155+
|
— |
PF00237+19-153+Ribosomal_protein_L22p/L17e
|
G3DSA:3.90.470.10:FF:000003+3-185+60S_ribosomal_protein_L17
|
PTHR11593+5-179+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-12;174-186
|
1.000
|
13-173
|
9cai_CP
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.895
|
21308.870
|
11.267
|
29.500
|
36.559
|
10.753
|
52.151
|
47.849
|
27.419
|
9.140
|
43.548
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
sienna3
|
11070.909
|
5874.618
|
7455.861
|
12830.452
|
12666.180
|
9288.297
|
6692.502
|
3546.525
|
19192.573
|
12157.886
|
15172.752
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.115
|
0.990
|
0.892
|
— |
-0.432
|
-0.464
|
-1.496
|
1.059
|
— | — | — | — | — |
No JSON data available for plots.