Hg_chrom8_TN10mRNA_16121
Organism: Heterodera glycines Gene Locus: chr8:7162379-7167031 Feature type: polypeptideProtein Sequence
Length: 690
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.859 | 0.708 | 1.186 | 0.95 | 1.039 | 1.301 | 0.673 | 2.391 | 1.192 | 1.332 | 0.395 | 1.79 | 1.288 | 1.198 | 1.154 | 1.014 | 0.641 | 1.098 | 0.334 | 0.725 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_15236
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
14-Not_described
|
0.999
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
nucleus
|
— | — | — | — |
79-99
|
0.996
|
— | — |
0.024
|
— | — |
0.458
|
0.204
|
0.029
|
0.438
|
0.152
|
0.428
|
0.220
|
0.014
|
0.178
|
0.401
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012263
|
1.000
|
1.000
|
Hsc_gene_3676.t1
|
Hsc_gene_3676.t1;Hsc_gene_3677.t1
|
— |
Q20069.1 GATOR complex protein NPRL3 [Caenorhabditis elegans]
|
KAI1724857.1 phosducin domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0032007
|
GO:0008150_0.960|GO:0005575_0.706|GO:0110165_0.703|GO:0009987_0.667|GO:0065007_0.642|GO:0050789_0.626|GO:0016020_0.619|GO:0005622_0.608|GO:0050794_0.603|GO:0050896_0.583|GO:0051716_0.554|GO:0032502_0.547|GO:0048856_0.547|GO:0043226_0.544|GO:0005737_0.541|GO:0007154_0.523|GO:0023052_0.518|GO:0048519_0.517|GO:0043229_0.513|GO:0043227_0.510|GO:0007165_0.502
|
IPR005365+90-219_231-515+
|
— |
PF03666+231-515+Nitrogen_Permease_regulator_of_amino_acid_transport_activity_3
|
— |
PTHR13153+90-219+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
525-592
|
2.000
|
1-524;593-690
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.628
|
77171.890
|
5.638
|
-14.500
|
25.797
|
12.319
|
44.928
|
55.072
|
13.043
|
12.754
|
49.855
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
darkgrey
|
1504.809
|
2209.265
|
1294.826
|
1297.332
|
1426.621
|
1147.131
|
1309.600
|
990.909
|
375.249
|
2673.724
|
1688.663
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.001
|
-0.905
|
0.112
|
0.105
|
-0.300
|
0.202
|
-0.317
|
0.545
|
-2.943
|
— | — | — | — |
No JSON data available for plots.