Hg_chrom8_TN10mRNA_16122
Organism: Heterodera glycines Gene Locus: chr8:7167153-7168769 Feature type: polypeptideProtein Sequence
Length: 259
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.898 | 0.988 | 1.334 | 0.399 | 1.48 | 0.99 | 1.057 | 0.772 | 0.772 | 1.67 | 0.702 | 0.681 | 1.073 | 0.594 | 1.34 | 1.213 | 0.823 | 0.761 | 0.0 | 0.795 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_15237
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
25-Not_Clustered
|
0.833
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal|nuclear_export_signal
|
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.677
|
0.123
|
0.004
|
0.520
|
0.080
|
0.073
|
0.121
|
0.018
|
0.081
|
0.027
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004818
|
2.000
|
1.000
|
Hsc_gene_3678.t1
|
Hsc_gene_3678.t1
|
— |
Q2HJA9.1 Phosducin-like protein [Bos taurus]
|
KAI1715395.1 phosducin domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0008277
|
GO:0008150_0.843|GO:0009987_0.794|GO:0065007_0.736|GO:0050789_0.728|GO:0050794_0.704|GO:0005575_0.609|GO:0110165_0.607|GO:0005622_0.578|GO:0050896_0.550|GO:0051716_0.527|GO:0005737_0.506|GO:0003674_0.502
|
IPR001200+49-68_54-250_204-226_231-250+|IPR023196+54-128+|IPR024253+106-251+|IPR036249+56-251+|IPR051499+1-251+
|
— |
PF02114+106-251+Phosducin
|
— |
PTHR46052+1-251+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-71
|
1.000
|
72-259
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.564
|
28438.690
|
4.583
|
-11.000
|
28.958
|
8.108
|
50.579
|
49.421
|
12.741
|
16.216
|
50.965
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
turquoise
|
1154.222
|
1162.303
|
899.117
|
855.895
|
907.121
|
661.812
|
939.804
|
898.516
|
306.830
|
2447.883
|
1530.289
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.601
|
-0.579
|
— | — |
-0.440
|
0.517
|
0.337
|
0.208
|
-3.127
|
— | — | — | — |
No JSON data available for plots.