Hg_chrom8_TN10mRNA_16124
Organism: Heterodera glycines Gene Locus: chr8:7172726-7176488 Feature type: polypeptideProtein Sequence
Length: 671
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.936 | 1.005 | 0.596 | 0.874 | 0.845 | 1.796 | 0.479 | 1.49 | 0.563 | 1.067 | 0.632 | 1.315 | 1.49 | 1.06 | 1.49 | 1.533 | 1.222 | 1.061 | 1.376 | 0.219 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_15239
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
25-Eggs_Female
|
0.983
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.782
|
0.204
|
0.004
|
0.274
|
0.081
|
0.095
|
0.091
|
0.044
|
0.030
|
0.045
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002515
|
3.000
|
1.000
|
Hsc_gene_3681.t1
|
— | — | — |
KAI1723704.1 chromosome transmission fidelity protein 18 like protein [Ditylenchus destructor]
|
No
|
-0.030
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005524|GO:0016887
|
GO:0005575_0.929|GO:0110165_0.926|GO:0016020_0.855|GO:0005622_0.841|GO:0008150_0.839|GO:0043226_0.796|GO:0009987_0.795|GO:0043229_0.772|GO:0043227_0.737|GO:0043231_0.717|GO:0008152_0.648|GO:0043170_0.648|GO:0044238_0.638|GO:0005737_0.622|GO:0005634_0.619|GO:0006139_0.602|GO:0090304_0.591|GO:0006259_0.554|GO:0065007_0.554|GO:0050789_0.534|GO:0050794_0.528
|
IPR003959+163-206+|IPR027417+9-262_72-302+
|
— |
PF00004+163-206+ATPase_family_associated_with_various_cellular_activities_(AAA)
|
— |
PTHR23389+27-251+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-164;584-627
|
2.000
|
165-583;628-671
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.894
|
75203.220
|
9.750
|
31.000
|
22.802
|
10.879
|
52.310
|
47.690
|
14.456
|
8.346
|
52.906
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
turquoise
|
436.927
|
625.766
|
455.159
|
401.891
|
370.457
|
326.076
|
639.415
|
476.452
|
260.682
|
480.338
|
386.200
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.689
|
-0.776
|
— |
-0.150
|
— |
0.983
|
0.442
|
0.568
|
— | — | — | — | — |
No JSON data available for plots.