Hg_chrom8_TN10mRNA_16126
Organism: Heterodera glycines Gene Locus: chr8:7180701-7186075 Feature type: polypeptideProtein Sequence
Length: 973
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.884 | 0.908 | 0.916 | 0.567 | 1.199 | 2.003 | 0.551 | 1.439 | 0.754 | 1.264 | 0.529 | 1.39 | 1.342 | 0.731 | 1.741 | 1.116 | 1.078 | 1.028 | 1.107 | 0.272 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_15241
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
25-Eggs_Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
KRRR
|
— | — | — | — | — | — |
0.000
|
— | — |
0.850
|
0.198
|
0.003
|
0.292
|
0.060
|
0.141
|
0.092
|
0.084
|
0.024
|
0.022
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002515
|
3.000
|
1.000
|
Hsc_gene_3681.t1
|
Hsc_gene_3681.t1
|
— |
Q4JAB1.1 Replication factor C large subunit [Sulfolobus acidocaldarius DSM 639]
|
KAI1714282.1 chromosome transmission fidelity protein 18 like protein [Ditylenchus destructor]
|
No
|
-0.080
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005524|GO:0016887
|
GO:0005575_0.884|GO:0110165_0.882|GO:0008150_0.816|GO:0005622_0.800|GO:0016020_0.794|GO:0009987_0.781|GO:0043226_0.766|GO:0043229_0.728|GO:0043227_0.675|GO:0043231_0.649|GO:0008152_0.623|GO:0043170_0.623|GO:0044238_0.617|GO:0006139_0.575|GO:0090304_0.567|GO:0005634_0.550|GO:0006259_0.529
|
IPR003959+371-414+|IPR027417+278-512_279-561+
|
— |
PF00004+371-414+ATPase_family_associated_with_various_cellular_activities_(AAA)
|
— |
PTHR23389+31-908+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-263;886-929
|
2.000
|
264-885;930-973
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.610
|
110674.940
|
7.352
|
12.000
|
27.133
|
10.072
|
53.237
|
46.763
|
14.902
|
12.230
|
47.790
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
tan
|
1085.304
|
1338.826
|
1222.967
|
943.730
|
932.137
|
775.758
|
1450.205
|
951.407
|
1680.190
|
632.427
|
1081.468
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.360
|
-0.642
|
-0.265
|
— |
-0.251
|
0.913
|
— |
0.751
|
— | — | — | — | — |
No JSON data available for plots.