Hg_chrom8_TN10mRNA_16128
Organism: Heterodera glycines Gene Locus: chr8:7190577-7192318 Feature type: polypeptideProtein Sequence
Length: 283
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.904 | 1.068 | 1.092 | 0.487 | 1.355 | 0.997 | 0.715 | 0.883 | 0.785 | 1.48 | 0.214 | 2.079 | 1.178 | 0.612 | 2.524 | 1.262 | 0.695 | 0.75 | 0.272 | 0.831 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_15243
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
19-Eggs_Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
mitochondrial_transit_peptide
|
mitochondrion
|
— | — |
12-32
|
0.997
|
10-42
|
0.998
|
— | — |
0.000
|
— | — |
0.148
|
0.866
|
0.612
|
0.445
|
0.062
|
0.060
|
0.378
|
0.129
|
0.068
|
0.522
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012265
|
1.000
|
1.000
|
Hsc_gene_3683.t1
|
Hsc_gene_3683.t1
|
— |
A3QFD2.1 Co-chaperone protein HscB homolog [Shewanella loihica PV-4]
|
KAI6174124.1 Iron-sulfur cluster co-chaperone protein HscB, mitochondrial [Aphelenchoides besseyi];KAI6210826.1 Iron-sulfur cluster co-chaperone protein HscB, mitochondrial [Aphelenchoides besseyi]
|
No
|
-0.100
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0001671|GO:0044571|GO:0051087
|
GO:0008150_0.935|GO:0005575_0.888|GO:0009987_0.888|GO:0110165_0.888|GO:0005622_0.840|GO:0005737_0.739|GO:0016020_0.668|GO:0043226_0.632|GO:0043229_0.617|GO:0043227_0.584|GO:0043231_0.563
|
IPR001623+97-163_98-158_98-171+|IPR004640+42-274_113-234+|IPR036869+55-170_98-171+
|
SM00271+97-163+
|
— | — |
PTHR14021+42-274+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
276-283
|
1.000
|
1-275
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.687
|
32309.430
|
6.957
|
1.500
|
29.682
|
9.187
|
51.237
|
48.763
|
15.548
|
14.134
|
46.996
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
orange
|
652.999
|
888.859
|
448.300
|
459.016
|
534.239
|
426.564
|
825.015
|
417.810
|
770.031
|
779.419
|
775.395
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.218
|
-1.091
|
0.143
|
0.187
|
-0.311
|
0.963
|
— |
1.124
|
— | — | — | — | — |
No JSON data available for plots.