SCN Proteipedia

Hg_chrom8_TN10mRNA_16130

Organism: Heterodera glycines Gene Locus: chr8:7196465-7197438 Feature type: polypeptide

Protein Sequence

Length: 118

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.788	1.38	1.387	2.63	0.847	0.652	0.706	0.847	1.318	0.802	1.412	1.496	0.706	0.652	0.865	1.09	0.417	1.284	1.304	0.748	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom8_TN10gene_15245	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	24-Not_Clustered	0.781

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	nucleus	—	—	—	—	—	—	—	—	0.000	—	—	0.790	0.187	0.033	0.398	0.164	0.096	0.088	0.005	0.108	0.096

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0012267	1.000	1.000	Hsc_gene_3685.t1	Hsc_gene_3685.t1	—	Q628A6.1 Transcription elongation factor SPT4 [Caenorhabditis briggsae]	KAH7724905.1 transcription elongation factor SPT4 [Aphelenchus avenae]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0005634\|GO:0006355\|GO:0008270\|GO:0140673	GO:0008150_0.920\|GO:0009987_0.840\|GO:0005575_0.774\|GO:0110165_0.758\|GO:0008152_0.757\|GO:0043170_0.756\|GO:0065007_0.756\|GO:0050789_0.749\|GO:0044237_0.747\|GO:0044238_0.742\|GO:0009058_0.740\|GO:0009059_0.740\|GO:0010467_0.740\|GO:0044249_0.740\|GO:0050794_0.725\|GO:0006139_0.717\|GO:0034654_0.709\|GO:0090304_0.708\|GO:0016070_0.704\|GO:0141187_0.701\|GO:0032774_0.700\|GO:0006351_0.689\|GO:0006366_0.678\|GO:0005622_0.671\|GO:0006354_0.670\|GO:0006368_0.670\|GO:0019222_0.646\|GO:0048519_0.644\|GO:0031323_0.641\|GO:0060255_0.639\|GO:0048523_0.638\|GO:0080090_0.634\|GO:0009889_0.628\|GO:0031326_0.628\|GO:0010556_0.626\|GO:0016020_0.625\|GO:0043226_0.625\|GO:0010468_0.621\|GO:0019219_0.610\|GO:0051252_0.608\|GO:0009892_0.607\|GO:0010605_0.607\|GO:2001141_0.607\|GO:0006355_0.605\|GO:0031324_0.604\|GO:0043229_0.603\|GO:0009890_0.600\|GO:0010558_0.600\|GO:0031327_0.600\|GO:0045934_0.595\|GO:0051253_0.595\|GO:0045892_0.594\|GO:1902679_0.594\|GO:0032784_0.589\|GO:0032785_0.589\|GO:0043227_0.579\|GO:0043231_0.579\|GO:0003674_0.503	IPR009287+1-118_3-115+\|IPR022800+11-108_13-90+\|IPR029040+7-89+\|IPR038510+1-105+	SM01389+13-90+	PF06093+13-90+Spt4/RpoE2_zinc_finger	G3DSA:3.30.40.210:FF:000001+1-105+Transcription_elongation_factor_SPT4	PTHR12882+3-115+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	—	—	1.000	1-118	9vd9_i	STRUCT_HOMOLOG

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.765	13121.110	7.445	2.000	27.966	8.475	46.610	53.390	15.254	12.712	55.932

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	lightyellow	yellow	541.274	111.570	349.317	358.711	470.112	358.572	537.053	338.141	1244.689	488.255	812.441

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	1.417	1.548	0.147	0.357	-0.377	0.595	—	0.810	—	-1.634	—	—	—

No JSON data available for plots.

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