Hg_chrom8_TN10mRNA_16131
Organism: Heterodera glycines Gene Locus: chr8:7198488-7200489 Feature type: polypeptideProtein Sequence
Length: 335
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.076 | 1.111 | 1.031 | 0.515 | 0.746 | 0.995 | 0.995 | 1.194 | 0.796 | 1.493 | 0.588 | 0.878 | 1.244 | 1.32 | 0.914 | 0.853 | 0.881 | 1.402 | 0.918 | 0.615 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_15246
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
2-pJ2_J3_J4_Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.354
|
0.595
|
0.035
|
0.650
|
0.094
|
0.179
|
0.051
|
0.157
|
0.106
|
0.047
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012268
|
1.000
|
1.000
|
Hsc_gene_3686.t1
|
Hsc_gene_3686.t1
|
— |
P34492.4 Putative NipSnap protein K02D10.1 [Caenorhabditis elegans]
|
KAI1732691.1 haloacid dehalogenase-like hydrolase domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016791
|
GO:0003674_0.867|GO:0008150_0.808|GO:0003824_0.694|GO:0005575_0.686|GO:0110165_0.678|GO:0009987_0.646|GO:0008152_0.641|GO:0016787_0.624|GO:0016788_0.566|GO:0016791_0.555|GO:0042578_0.555|GO:0044238_0.534|GO:0005622_0.524|GO:0044237_0.519|GO:0005737_0.506
|
IPR006349+21-320+|IPR006357+3-326_23-131_23-290+|IPR023214+21-318_89-239+|IPR036412+19-321+
|
— |
PF13242+236-319+HAD-hyrolase-like|PF13344+23-131+Haloacid_dehalogenase-like_hydrolase
|
— |
PTHR19288+15-321+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
330-335
|
1.000
|
1-329
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.706
|
36219.340
|
6.085
|
-2.000
|
20.896
|
10.149
|
40.896
|
59.104
|
10.746
|
10.149
|
57.015
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
steelblue
|
955.799
|
506.703
|
1369.636
|
1432.104
|
1917.529
|
1539.833
|
1511.672
|
948.808
|
343.346
|
464.254
|
412.437
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.205
|
1.362
|
0.173
|
0.389
|
-0.302
|
— |
-0.804
|
0.814
|
— | — | — | — | — |
No JSON data available for plots.