Hg_chrom8_TN10mRNA_16132
Organism: Heterodera glycines Gene Locus: chr8:7201720-7205283 Feature type: polypeptideProtein Sequence
Length: 499
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.606 | 1.072 | 1.275 | 0.276 | 1.369 | 0.874 | 0.763 | 2.505 | 1.069 | 1.354 | 0.425 | 0.943 | 1.28 | 0.848 | 1.595 | 1.346 | 0.92 | 0.789 | 0.462 | 0.707 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_15247
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
11-Not_described
|
0.985
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— |
KKRGRKREEKRRKRNN
|
— | — | — | — | — | — |
0.000
|
— | — |
0.194
|
0.328
|
0.053
|
0.695
|
0.146
|
0.296
|
0.321
|
0.009
|
0.479
|
0.154
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012269
|
1.000
|
1.000
|
Hsc_gene_3687.t1
|
Hsc_gene_3687.t1
|
— |
Q3UFK8.2 FERM domain-containing protein 8 [Mus musculus]
|
KAI1709136.1 FERM central domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005856
|
GO:0008150_0.957|GO:0009987_0.896|GO:0065007_0.604|GO:0050789_0.598|GO:0050794_0.584|GO:0005575_0.528|GO:0110165_0.528|GO:0032501_0.517
|
IPR000299+115-499+|IPR014352+229-351+|IPR019748+234-358_235-349+|IPR019749+111-358+|IPR035963+232-353+|IPR051594+126-473+
|
SM00295+111-358+
|
PF00373+234-358+FERM_central_domain
|
— |
PTHR13283+126-473+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-127;369-414
|
2.000
|
128-368;415-499
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.527
|
56505.790
|
5.711
|
-10.500
|
30.862
|
12.625
|
53.908
|
46.092
|
15.631
|
15.230
|
48.697
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
red
|
yellow
|
1186.612
|
1203.098
|
919.573
|
957.467
|
1358.089
|
1125.862
|
2345.211
|
923.021
|
1190.989
|
986.066
|
1073.890
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.618
|
-0.467
|
0.167
|
0.472
|
-0.256
|
1.070
|
-0.393
|
1.489
|
— | — | — | — | — |
No JSON data available for plots.