SCN Proteipedia

Hg_chrom8_TN10mRNA_16133

Organism: Heterodera glycines Gene Locus: chr8:7205996-7212906 Feature type: polypeptide

Protein Sequence

Length: 607

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	1.207	0.69	0.599	1.136	1.016	1.267	0.745	2.059	0.293	1.135	0.524	1.551	1.373	1.711	1.412	1.6	0.918	0.649	0.253	0.194	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom8_TN10gene_15248	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	7-ppJ2	0.995

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	nucleus	—	—	107-128	0.999	1-22	0.994	—	—	0.000	—	—	0.758	0.157	0.006	0.366	0.037	0.051	0.070	0.021	0.086	0.056

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0012270	1.000	1.000	Hsc_gene_3688.t1	—	—	Q9XVV3.1 Nuclear hormone receptor family member nhr-67 [Caenorhabditis elegans]	KAI1717763.1 zinc finger, c4 type (two domains) domain-containing protein [Ditylenchus destructor]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	Yes	GO:0003700\|GO:0006355\|GO:0008270\|GO:0043565	GO:0008150_0.946\|GO:0009987_0.890\|GO:0065007_0.863\|GO:0050789_0.859\|GO:0050794_0.854\|GO:0003674_0.824\|GO:0005488_0.824\|GO:0005575_0.818\|GO:0110165_0.818\|GO:0008152_0.792\|GO:0019222_0.792\|GO:0031323_0.792\|GO:0044237_0.792\|GO:0044238_0.788\|GO:0080090_0.788\|GO:0043170_0.785\|GO:0060255_0.785\|GO:0009058_0.769\|GO:0009889_0.769\|GO:0031326_0.769\|GO:0044249_0.769\|GO:0009059_0.768\|GO:0010556_0.768\|GO:0010467_0.766\|GO:0010468_0.764\|GO:0006139_0.762\|GO:0019219_0.762\|GO:0016070_0.761\|GO:0051252_0.761\|GO:0090304_0.761\|GO:0034654_0.756\|GO:0141187_0.756\|GO:0032774_0.755\|GO:0032501_0.751\|GO:0097159_0.751\|GO:2001141_0.750\|GO:0003676_0.749\|GO:0005622_0.749\|GO:0006351_0.749\|GO:0006355_0.749\|GO:0003677_0.728\|GO:0043565_0.728\|GO:0043226_0.719\|GO:0032502_0.698\|GO:0043229_0.692\|GO:0048856_0.681\|GO:0006357_0.678\|GO:0006366_0.678\|GO:0003690_0.623\|GO:1990837_0.623\|GO:0007275_0.615\|GO:0016020_0.607\|GO:0000976_0.606\|GO:0001067_0.606\|GO:0048731_0.595\|GO:0140110_0.587\|GO:0048519_0.579\|GO:0003700_0.565\|GO:0048523_0.559\|GO:0043227_0.537\|GO:0005634_0.517\|GO:0043231_0.517\|GO:0048518_0.517\|GO:0030154_0.514\|GO:0048869_0.514\|GO:0048522_0.508	IPR001628+17-93_17-97_19-92_20-36_20-46_36-51_74-82_82-90+\|IPR013088+14-126+\|IPR035500+91-503_330-513+\|IPR050274+17-469+	SM00399+17-93+	PF00105+19-92+Zinc_finger,_C4_type_(two_domains)	G3DSA:3.30.50.10:FF:000019+12-123+Nuclear_receptor_subfamily_2_group_E_member	PTHR24083+17-469+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	93-204;272-340;511-607	3.000	1-92;205-271;341-510	4iqr_F	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.913	65780.180	8.104	18.500	23.888	10.049	48.600	51.400	14.498	9.390	56.178

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	black	turquoise	267.822	397.601	550.450	309.903	112.924	52.735	141.913	199.218	15.678	498.186	291.397

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	0.239	-0.497	-0.720	-1.488	-1.084	1.438	1.813	-0.348	-5.134	4.515	—	—	—

No JSON data available for plots.

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