Hg_chrom8_TN10mRNA_16134
Organism: Heterodera glycines Gene Locus: chr8:7215920-7219284 Feature type: polypeptideProtein Sequence
Length: 568
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.983 | 0.737 | 0.992 | 0.729 | 0.792 | 1.038 | 0.796 | 1.232 | 0.978 | 1.237 | 0.534 | 2.278 | 1.32 | 0.982 | 1.653 | 0.905 | 0.924 | 1.094 | 1.625 | 0.777 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_15249
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
16-Females_and_Males
|
0.990
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
endoplasmic_reticulum
|
— | — | — | — | — | — | — | — |
0.005
|
— | — |
0.198
|
0.419
|
0.043
|
0.326
|
0.839
|
0.403
|
0.588
|
0.051
|
0.322
|
0.056
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012271
|
1.000
|
1.000
|
Hsc_gene_3690.t1
|
Hsc_gene_3690.t1
|
— |
Q8K4C0.3 Flavin-containing monooxygenase 5 [Rattus norvegicus]
|
KAI1697308.1 flavin-binding monooxygenase-like domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004499|GO:0050660|GO:0050661
|
GO:0008150_0.853|GO:0009987_0.743|GO:0003674_0.703|GO:0008152_0.632|GO:0044237_0.592|GO:0003824_0.561|GO:0005575_0.550|GO:0110165_0.550|GO:0044281_0.503|GO:0016020_0.502
|
IPR000960+14-557_16-32_69-87_93-108_118-130_156-172_213-228_312-329_331-358_390-407+|IPR020946+16-555+|IPR036188+14-235_15-176_177-257_310-344_326-507_345-462+|IPR050346+15-528+
|
— |
PF00743+16-555+Flavin-binding_monooxygenase-like
|
G3DSA:3.50.50.60:FF:000159+15-418+Dimethylaniline_monooxygenase_[N-oxide-forming]
|
PTHR23023+15-528+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-5
|
1.000
|
6-568
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.751
|
64064.730
|
8.589
|
15.000
|
24.296
|
11.972
|
43.486
|
56.514
|
14.085
|
10.211
|
50.176
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
brown
|
333.002
|
300.744
|
391.809
|
327.026
|
374.849
|
449.681
|
602.046
|
852.923
|
81.430
|
158.656
|
125.559
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — |
0.277
|
0.432
|
0.823
|
-0.362
|
— | — | — | — | — |
No JSON data available for plots.