Hg_chrom8_TN10mRNA_16135
Organism: Heterodera glycines Gene Locus: chr8:7220112-7222850 Feature type: polypeptideProtein Sequence
Length: 341
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.262 | 0.409 | 0.373 | 0.91 | 0.929 | 0.677 | 1.222 | 0.44 | 1.499 | 1.308 | 1.066 | 2.588 | 1.303 | 1.353 | 0.658 | 0.545 | 0.913 | 0.889 | 0.902 | 1.208 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_15250
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
18-ppJ2_pJ2_J3_J4_Male
|
0.993
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
transmembrane_domain
|
mitochondrion
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.083
|
0.849
|
0.051
|
0.215
|
0.321
|
0.104
|
0.226
|
0.115
|
0.212
|
0.065
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004820
|
2.000
|
1.000
|
Hsc_gene_3691.t1
|
Hsc_gene_3691.t1
|
— |
P40614.1 Phosphate carrier protein, mitochondrial [Caenorhabditis elegans]
|
KAI1713970.1 mitochondrial carrier protein domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005315|GO:1990547
|
GO:0005575_0.797|GO:0110165_0.791|GO:0008150_0.783|GO:0016020_0.745|GO:0005622_0.688|GO:0005737_0.684|GO:0003674_0.675|GO:0043226_0.644|GO:0043229_0.643|GO:0043227_0.628|GO:0043231_0.614|GO:0009987_0.549
|
IPR018108+43-127_49-129_140-224_143-228_241-319_242-320+|IPR023395+48-316_48-319+|IPR044677+28-329+
|
— |
PF00153+49-129_143-228_242-320+Mitochondrial_carrier_protein
|
G3DSA:1.50.40.10:FF:000005+45-320+Mitochondrial_phosphate_carrier_protein_2
|
PTHR45671+28-329+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
334-341
|
1.000
|
1-333
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.851
|
36930.700
|
8.970
|
10.500
|
18.768
|
10.850
|
32.551
|
67.449
|
11.144
|
7.625
|
49.853
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
grey
|
8266.440
|
4292.931
|
14883.304
|
8847.523
|
9140.093
|
10055.958
|
6001.615
|
9172.263
|
8682.086
|
6256.477
|
7296.024
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.565
|
0.906
|
-0.643
|
— |
0.152
|
-0.733
|
— |
-0.469
|
— | — | — | — | — |
No JSON data available for plots.