Hg_chrom8_TN10mRNA_16136
Organism: Heterodera glycines Gene Locus: chr8:7220576-7222850 Feature type: polypeptideProtein Sequence
Length: 387
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.022 | 0.361 | 0.47 | 0.713 | 0.818 | 0.663 | 1.077 | 0.388 | 1.321 | 1.397 | 1.018 | 2.28 | 1.22 | 1.292 | 0.844 | 0.738 | 0.932 | 1.292 | 1.193 | 1.368 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_15250
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
18-ppJ2_pJ2_J3_J4_Male
|
0.993
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
mitochondrion
|
— |
KKNPIVVVRSRRKSG
|
12-43
|
0.741
|
— | — | — | — |
0.000
|
— | — |
0.104
|
0.657
|
0.134
|
0.313
|
0.372
|
0.153
|
0.218
|
0.192
|
0.212
|
0.188
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004820
|
2.000
|
1.000
|
Hsc_gene_3691.t1
|
Hsc_gene_3691.t1
|
— |
P40614.1 Phosphate carrier protein, mitochondrial [Caenorhabditis elegans]
|
KAH7676149.1 phosphate carrier protein [Aphelenchus avenae];KAH7729618.1 phosphate carrier protein [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005315|GO:1990547
|
GO:0005575_0.813|GO:0110165_0.810|GO:0008150_0.774|GO:0016020_0.768|GO:0005622_0.701|GO:0005737_0.701|GO:0003674_0.687|GO:0043226_0.654|GO:0043229_0.650|GO:0043227_0.639|GO:0043231_0.628|GO:0009987_0.557
|
IPR018108+89-173_95-175_186-270_189-274_287-365_288-366+|IPR023395+94-362_94-365+|IPR044677+75-375+
|
— |
PF00153+95-175_189-274_288-366+Mitochondrial_carrier_protein
|
G3DSA:1.50.40.10:FF:000005+91-366+Mitochondrial_phosphate_carrier_protein_2
|
PTHR45671+75-375+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
380-387
|
1.000
|
1-379
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.842
|
42485.250
|
9.488
|
14.500
|
19.121
|
11.370
|
34.109
|
65.891
|
11.628
|
7.494
|
50.129
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
grey
|
8266.440
|
4292.931
|
14883.304
|
8847.523
|
9140.093
|
10055.958
|
6001.615
|
9172.263
|
8682.086
|
6256.477
|
7296.024
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.565
|
0.906
|
-0.643
|
— |
0.152
|
-0.733
|
— |
-0.469
|
— | — | — | — | — |
No JSON data available for plots.