Hg_chrom8_TN10mRNA_16138
Organism: Heterodera glycines Gene Locus: chr8:7224819-7229838 Feature type: polypeptideProtein Sequence
Length: 649
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.003 | 0.717 | 0.504 | 0.531 | 0.77 | 1.106 | 1.046 | 1.079 | 1.267 | 1.541 | 0.397 | 1.813 | 1.455 | 0.711 | 1.604 | 1.167 | 0.834 | 1.004 | 0.948 | 0.997 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_15252
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
19-Eggs_Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
transmembrane_domain
|
cell_membrane|lysosome_vacuole
|
— |
RRRR
|
16-40
|
0.993
|
11-31
|
0.931
|
— | — |
0.000
|
— | — |
0.091
|
0.282
|
0.096
|
0.153
|
0.389
|
0.718
|
0.413
|
0.107
|
0.597
|
0.070
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012273
|
1.000
|
1.000
|
Hsc_gene_3693.t1
|
Hsc_gene_3693.t1;Hsc_gene_3693.t2
|
— |
Q09466.1 ABC transporter ATP-binding protein/permease wht-3 [Caenorhabditis elegans]
|
KAI1713968.1 ABC-2 type transporter domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005524|GO:0016020|GO:0016887|GO:0140359
|
GO:0008150_0.928|GO:0005575_0.836|GO:0110165_0.836|GO:0016020_0.794|GO:0009987_0.761|GO:0006810_0.745|GO:0051179_0.745|GO:0051234_0.745|GO:0003674_0.672|GO:0071944_0.664|GO:0005886_0.657|GO:0055085_0.562
|
IPR003439+75-316_92-244+|IPR003593+101-293+|IPR013525+384-593+|IPR017871+216-230+|IPR027417+63-313_75-304+|IPR043926+273-349+|IPR050352+65-635+
|
SM00382+101-293+
|
PF00005+92-244+ABC_transporter|PF01061+384-593+ABC-2_type_transporter|PF19055+273-349+ABC-2_type_transporter
|
— |
PTHR48041+65-635+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-69
|
1.000
|
70-649
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.880
|
71974.310
|
9.831
|
27.000
|
20.031
|
12.018
|
40.678
|
59.322
|
12.635
|
7.396
|
48.382
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
turquoise
|
913.608
|
1442.933
|
875.530
|
667.083
|
838.871
|
872.967
|
1966.951
|
697.025
|
82.740
|
1174.469
|
706.585
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.949
|
-1.250
|
-0.285
|
0.299
|
— |
1.183
|
-0.427
|
1.639
|
-3.932
|
— | — | — | — |
No JSON data available for plots.