Hg_chrom8_TN10mRNA_16142
Organism: Heterodera glycines Gene Locus: chr8:7239787-7244064 Feature type: polypeptideProtein Sequence
Length: 439
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.007 | 2.013 | 1.16 | 0.157 | 0.645 | 1.402 | 0.786 | 1.139 | 0.81 | 1.478 | 0.38 | 1.876 | 0.759 | 1.095 | 1.395 | 0.846 | 0.784 | 1.312 | 0.35 | 0.67 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_15255
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
29-J3_J4_Female_Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— |
RRRR
|
5-25
|
0.994
|
— | — | — | — |
0.000
|
— | — |
0.394
|
0.097
|
0.012
|
0.545
|
0.190
|
0.184
|
0.052
|
0.004
|
0.387
|
0.196
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002211
|
3.000
|
1.000
|
Hsc_gene_3713.t1
|
— | — |
P45843.3 Protein scarlet [Drosophila melanogaster]
|
KAI1713968.1 ABC-2 type transporter domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005524|GO:0016887
|
GO:0008150_0.892|GO:0005575_0.708|GO:0110165_0.708|GO:0009987_0.702|GO:0016020_0.611|GO:0003674_0.540|GO:0051179_0.521|GO:0051234_0.509|GO:0006810_0.507
|
IPR003439+32-252_51-180+|IPR027417+22-221_32-209+|IPR050352+30-219+
|
— |
PF00005+51-180+ABC_transporter
|
— |
PTHR48041+30-219+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
357-439
|
1.000
|
1-356
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.783
|
48306.670
|
6.664
|
1.000
|
21.868
|
7.745
|
46.697
|
53.303
|
11.617
|
10.251
|
55.809
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
grey
|
1164.612
|
557.992
|
675.595
|
983.931
|
1323.203
|
1313.990
|
1490.074
|
1237.179
|
350.402
|
1989.140
|
1286.824
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
0.681
|
0.651
|
0.396
|
— |
0.192
|
— |
0.412
|
-2.598
|
— | — | — | — |
No JSON data available for plots.