Hg_chrom8_TN10mRNA_16148
Organism: Heterodera glycines Gene Locus: chr8:7276732-7279340 Feature type: polypeptideProtein Sequence
Length: 436
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.693 | 1.547 | 1.084 | 0.87 | 1.682 | 0.941 | 1.01 | 1.491 | 0.765 | 1.023 | 1.112 | 0.944 | 0.701 | 0.794 | 1.217 | 0.983 | 0.639 | 1.216 | 0.882 | 0.337 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_15261
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
20-Egg_ppJ2_pJ2_J3_J4
|
0.993
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
KRKL,KKKKRK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.936
|
0.101
|
0.077
|
0.225
|
0.060
|
0.108
|
0.066
|
0.032
|
0.058
|
0.057
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012275
|
1.000
|
1.000
|
Hsc_gene_3698.t1
|
Hsc_gene_3698.t1
|
— | — |
KAF7639839.1 C3HC-type domain-containing protein [Meloidogyne graminicola]
|
No
|
0.100
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0008270
|
GO:0005575_0.902|GO:0110165_0.900|GO:0005622_0.832|GO:0016020_0.802|GO:0043226_0.781|GO:0043229_0.747|GO:0043227_0.727|GO:0043231_0.702|GO:0005634_0.640|GO:0005737_0.582|GO:0071944_0.526|GO:0005886_0.510|GO:0008150_0.502
|
IPR012935+58-145+|IPR052238+58-143+
|
— |
PF07967+58-145+C3HC_zinc_finger-like
|
— |
PTHR15835+58-143+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
280-436
|
1.000
|
1-279
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.650
|
48354.040
|
5.798
|
-5.500
|
32.339
|
7.798
|
53.440
|
46.560
|
16.284
|
16.055
|
52.523
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
2596.024
|
1998.134
|
2549.668
|
1756.971
|
2390.625
|
2138.722
|
1685.877
|
2130.971
|
3995.767
|
2866.667
|
3350.567
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.122
|
-0.323
|
-0.428
|
0.412
|
-0.145
|
-0.334
|
— | — | — | — | — | — | — |
No JSON data available for plots.