Hg_chrom8_TN10mRNA_16158
Organism: Heterodera glycines Gene Locus: chr8:7307489-7312204 Feature type: polypeptideProtein Sequence
Length: 479
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.68 | 0.631 | 0.759 | 0.504 | 0.487 | 1.392 | 0.77 | 1.148 | 1.485 | 1.552 | 0.443 | 1.842 | 2.726 | 0.923 | 1.15 | 1.163 | 0.65 | 0.949 | 1.767 | 1.044 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_15269
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
4-Egg_Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
transmembrane_domain
|
endoplasmic_reticulum
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.153
|
0.205
|
0.005
|
0.126
|
0.810
|
0.216
|
0.544
|
0.005
|
0.206
|
0.008
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002516
|
3.000
|
1.000
|
Hsc_gene_3703.t1
|
Hsc_gene_3703.t1
|
— |
P53439.2 Phosphatidate cytidylyltransferase [Caenorhabditis elegans]
|
KAF7639853.1 Phosphatidate cytidylyltransferase [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004605|GO:0016020|GO:0016772
|
GO:0005575_0.839|GO:0110165_0.836|GO:0016020_0.810|GO:0008150_0.776|GO:0071944_0.738|GO:0009987_0.735|GO:0005886_0.727|GO:0003674_0.719|GO:0005622_0.616|GO:0005737_0.616|GO:0043226_0.602|GO:0043227_0.588|GO:0043229_0.586|GO:0043231_0.576|GO:0051179_0.573|GO:0005773_0.567|GO:0003824_0.559|GO:0012505_0.538|GO:0016740_0.535|GO:0016772_0.506
|
IPR000374+397-423+|IPR016720+47-479_54-472+
|
— |
PF01148+109-439+Cytidylyltransferase_family
|
— |
PTHR13773+54-472+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-66
|
1.000
|
67-479
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.777
|
55020.090
|
8.881
|
12.500
|
17.954
|
17.954
|
38.205
|
61.795
|
10.856
|
7.098
|
43.841
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey60
|
1515.982
|
2956.217
|
1844.914
|
1053.090
|
945.486
|
1203.781
|
2489.024
|
2378.090
|
478.219
|
1447.279
|
1031.967
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.909
|
-1.626
|
-0.701
|
-0.187
|
0.363
|
1.059
|
0.878
|
0.208
|
— | — | — | — | — |
No JSON data available for plots.