SCN Proteipedia

Hg_chrom8_TN10mRNA_16159

Organism: Heterodera glycines Gene Locus: chr8:7312737-7315089 Feature type: polypeptide

Protein Sequence

Length: 406

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.773	1.146	1.164	0.34	2.094	1.895	0.792	1.478	0.383	0.999	0.97	2.028	0.753	0.805	1.81	1.02	0.686	0.448	0.758	0.435	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom8_TN10gene_15270	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	4-Egg_Male	1.000

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	signal_peptide\|transmembrane_domain	endoplasmic_reticulum	—	SKTKRQKRRRD,RRKKERKRKGRKRLD,KRRTPNTTEDEERRKKERK,RRTPNTTEDEERRKKERKR	—	—	—	—	—	—	0.000	—	—	0.396	0.247	0.050	0.183	0.804	0.194	0.343	0.090	0.193	0.034

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0001432	2.000	3.000	Hsc_gene_3704.t1;Hsc_gene_3704.t2;Hsc_gene_3704.t3	Hsc_gene_3704.t1;Hsc_gene_3704.t2;Hsc_gene_3704.t3	—	Q60ZR7.1 Resistance to inhibitors of cholinesterase protein 3 [Caenorhabditis briggsae]	KAI1717731.1 resistance to inhibitors of cholinesterase like 3 domain-containing protein [Ditylenchus destructor]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	—	GO:0008150_0.961\|GO:0005575_0.939\|GO:0110165_0.939\|GO:0009987_0.927\|GO:0065007_0.925\|GO:0050789_0.910\|GO:0050794_0.899\|GO:0016020_0.887\|GO:0005622_0.885\|GO:0003674_0.870\|GO:0005488_0.870\|GO:0005515_0.856\|GO:0043226_0.853\|GO:0032501_0.840\|GO:0043229_0.825\|GO:0048518_0.814\|GO:0008152_0.804\|GO:0043170_0.804\|GO:0048522_0.801\|GO:0051179_0.798\|GO:0071944_0.798\|GO:0005886_0.795\|GO:0009058_0.789\|GO:0009059_0.789\|GO:0010467_0.789\|GO:0044237_0.789\|GO:0044249_0.789\|GO:0043227_0.783\|GO:0023052_0.777\|GO:0044238_0.771\|GO:0007154_0.767\|GO:0051641_0.755\|GO:0043231_0.752\|GO:0019538_0.743\|GO:0010646_0.739\|GO:0023051_0.738\|GO:0051239_0.736\|GO:0033036_0.722\|GO:0070727_0.722\|GO:0008104_0.720\|GO:0010647_0.703\|GO:0023056_0.702\|GO:0003008_0.700\|GO:0007267_0.687\|GO:0007268_0.684\|GO:0030054_0.684\|GO:0044057_0.684\|GO:0045202_0.684\|GO:0098916_0.684\|GO:0099536_0.684\|GO:0099537_0.684\|GO:0050804_0.680\|GO:0099177_0.680\|GO:0051604_0.678\|GO:0003012_0.675\|GO:0006457_0.674\|GO:0006936_0.674\|GO:0006937_0.670\|GO:0007271_0.670\|GO:0032222_0.670\|GO:0032224_0.670\|GO:0034394_0.670\|GO:0050806_0.670\|GO:0090257_0.670\|GO:0051082_0.654\|GO:0044183_0.650\|GO:0098590_0.648\|GO:0042995_0.635\|GO:0120025_0.634\|GO:0043005_0.598\|GO:0036477_0.568\|GO:0044297_0.563\|GO:0043025_0.558	IPR026160+65-403+\|IPR032763+78-253+	—	PF15361+78-253+Resistance_to_inhibitors_of_cholinesterase_homologue_3	—	PTHR21723+65-403+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-162;241-406	1.000	163-240	—	—

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.535	46645.340	5.332	-9.000	37.192	8.128	60.837	39.163	18.227	18.966	44.089

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	black	yellow	1209.533	1051.637	1093.744	832.791	745.655	795.908	1109.303	1226.369	2111.360	1137.409	1554.817

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.173	-0.474	-0.284	-0.192	—	0.490	0.518	—	—	—	—	—	—

No JSON data available for plots.

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