Hg_chrom8_TN10mRNA_16161
Organism: Heterodera glycines Gene Locus: chr8:7315212-7321893 Feature type: polypeptideProtein Sequence
Length: 1,443
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.056 | 1.015 | 1.197 | 0.574 | 1.282 | 1.884 | 0.627 | 1.317 | 0.601 | 0.983 | 0.725 | 1.427 | 0.712 | 1.04 | 1.443 | 1.089 | 1.193 | 0.819 | 0.693 | 0.571 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_15271
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
11-Not_Clustered
|
0.370
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
RRRK,RWRKRIR,VKAGKKPR,RKDPDAMAGLRMTRARLR,KRLDQLLNVANTLRRRRRE
|
— | — | — | — | — | — |
0.000
|
— | — |
0.962
|
0.065
|
0.013
|
0.143
|
0.044
|
0.020
|
0.049
|
0.012
|
0.041
|
0.035
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012279
|
1.000
|
1.000
|
Hsc_gene_3705.t1
|
— | — | — |
KAH7705455.1 CBN-GON-4 protein, partial [Aphelenchus avenae]
|
No
|
-0.120
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — |
IPR052435+49-1264+
|
— | — | — |
PTHR16088+49-1264+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-501;777-1074;1409-1443
|
2.000
|
502-776;1075-1408
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.543
|
160986.760
|
5.798
|
-16.000
|
28.760
|
8.039
|
55.371
|
44.629
|
14.484
|
14.276
|
52.668
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
turquoise
|
1930.089
|
1033.583
|
845.309
|
721.685
|
882.339
|
589.382
|
1609.439
|
547.797
|
409.187
|
5801.175
|
3490.323
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.521
|
-0.655
|
— |
0.259
|
-0.568
|
1.460
|
— |
1.699
|
-3.935
|
— | — | — | — |
No JSON data available for plots.