SCN Proteipedia

Hg_chrom8_TN10mRNA_16162

Organism: Heterodera glycines Gene Locus: chr8:7321909-7323030 Feature type: polypeptide

Protein Sequence

Length: 200

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.465	0.698	1.091	0.345	1.25	1.795	0.476	1.5	1.333	1.486	1.061	1.471	1.25	0.577	0.918	1.143	1.23	0.909	0.769	1.029	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom8_TN10gene_15272	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	24-J3_Female	0.999

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_export_signal	cytoplasm	—	—	—	—	—	—	—	—	0.000	—	—	0.354	0.307	0.017	0.559	0.174	0.402	0.387	0.040	0.184	0.108

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0012280	1.000	1.000	Hsc_gene_3707.t1	Hsc_gene_3707.t1	—	Q9Z1B5.2 Mitotic spindle assembly checkpoint protein MAD2A [Mus musculus]	KAI1713994.1 HORMA domain-containing protein [Ditylenchus destructor]	No	-0.100

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	—	GO:0008150_0.936\|GO:0009987_0.885\|GO:0065007_0.849\|GO:0050789_0.838\|GO:0005575_0.822\|GO:0050794_0.818\|GO:0110165_0.815\|GO:0005622_0.768\|GO:0016020_0.730\|GO:0043226_0.693\|GO:0043229_0.690\|GO:0016043_0.672\|GO:0071840_0.672\|GO:0043227_0.666\|GO:0050896_0.656\|GO:0043231_0.637\|GO:0051716_0.637\|GO:0048519_0.590\|GO:0051128_0.582\|GO:0007154_0.579\|GO:0006996_0.578\|GO:0023052_0.576\|GO:0007165_0.560\|GO:0048523_0.549\|GO:0007049_0.546\|GO:0022402_0.545\|GO:0000280_0.543\|GO:0048285_0.543\|GO:0051726_0.540\|GO:0005634_0.539\|GO:0000278_0.538\|GO:0140014_0.538\|GO:1903047_0.538\|GO:0007346_0.532\|GO:0035556_0.527\|GO:0033043_0.509\|GO:0010564_0.508\|GO:0007059_0.506\|GO:0051276_0.506\|GO:0098813_0.506\|GO:0051129_0.505\|GO:0010639_0.504\|GO:0000070_0.503\|GO:0000819_0.503\|GO:0044770_0.503\|GO:0044772_0.503\|GO:1901987_0.503\|GO:0000075_0.502\|GO:0010948_0.502\|GO:0033044_0.502\|GO:0045786_0.502\|GO:0045930_0.502\|GO:1901988_0.502\|GO:1901990_0.502\|GO:1901991_0.502	IPR003511+13-194_15-188+\|IPR036570+1-199_9-198+\|IPR045091+11-198+	—	PF02301+15-188+HORMA_domain	G3DSA:3.30.900.10:FF:000002+1-200+Mitotic_spindle_assembly_checkpoint_protein_MAD2A	PTHR11842+11-198+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	—	—	1.000	1-200	2v64_H	STRUCT_HOMOLOG

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.600	23093.310	6.232	-1.000	28.000	12.000	53.500	46.500	14.500	13.500	42.500

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	grey60	purple	312.991	98.833	135.883	424.938	629.160	356.527	742.034	192.567	4.146	398.749	229.634

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	—	1.968	1.756	0.534	-0.804	1.068	-1.004	2.093	-6.788	6.948	—	—	—

No JSON data available for plots.

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