SCN Proteipedia

Hg_chrom8_TN10mRNA_16165

Organism: Heterodera glycines Gene Locus: chr8:7331905-7355581 Feature type: polypeptide

Protein Sequence

Length: 1,393

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	1.085	1.302	0.835	0.545	0.79	1.178	0.923	1.041	1.292	1.232	0.609	1.52	1.276	0.925	1.084	1.015	1.036	1.044	0.718	0.655	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom8_TN10gene_15275	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	9-Migratory	0.997

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	transmembrane_domain	cell_membrane	—	—	—	—	—	—	—	—	0.000	—	—	0.092	0.178	0.026	0.279	0.163	0.571	0.328	0.017	0.591	0.030

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0012283	1.000	1.000	Hsc_gene_3710.t1	Hsc_gene_3710.t1	—	Q9Y666.3 Solute carrier family 12 member 7 [Homo sapiens]	KAI1724841.1 amino acid permease domain-containing protein [Ditylenchus destructor]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0006811\|GO:0015377\|GO:0016020\|GO:0022857\|GO:0055085	GO:0008150_0.978\|GO:0009987_0.906\|GO:0051179_0.857\|GO:0006810_0.855\|GO:0051234_0.855\|GO:0005575_0.834\|GO:0003674_0.821\|GO:0110165_0.800\|GO:0055085_0.768\|GO:0016020_0.767\|GO:0006811_0.755\|GO:0071944_0.742\|GO:0005886_0.731\|GO:0005215_0.715\|GO:0022857_0.715\|GO:0034220_0.712\|GO:0015075_0.685\|GO:0098660_0.673\|GO:0006812_0.665\|GO:0098655_0.659\|GO:0008324_0.642\|GO:0015318_0.640\|GO:0030001_0.636\|GO:0098662_0.625\|GO:0022890_0.596\|GO:0046873_0.596\|GO:0006820_0.580\|GO:0006821_0.577\|GO:0015698_0.577\|GO:0098661_0.573\|GO:0098656_0.571\|GO:1902476_0.567\|GO:0008509_0.545\|GO:0015103_0.541\|GO:0022804_0.539\|GO:0015108_0.538\|GO:0015291_0.536\|GO:0022853_0.532\|GO:0015293_0.529\|GO:0015294_0.529\|GO:0006813_0.516\|GO:0015296_0.516\|GO:0015377_0.516\|GO:0071805_0.512	IPR004841+257-428_602-884+\|IPR004842+167-1350+\|IPR018491+904-999_1042-1111+	—	PF00324+257-428_602-884+Amino_acid_permease\|PF03522+904-999_1042-1111+Solute_carrier_family_12	—	PTHR11827+167-1350+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-191;1151-1393	1.000	192-1150	6npl_B	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.786	152089.550	7.507	14.500	20.747	9.835	44.365	55.635	11.414	9.332	53.984

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	brown	blue	3668.386	1955.670	5562.024	2648.914	1432.784	1372.970	1804.849	5262.717	2210.491	6876.349	4876.695

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	1.279	0.300	-0.962	-0.918	—	0.405	1.836	-1.403	—	—	—	—	—

No JSON data available for plots.

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