Hg_chrom8_TN10mRNA_16167
Organism: Heterodera glycines Gene Locus: chr8:7366710-7368533 Feature type: polypeptideProtein Sequence
Length: 310
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.938 | 0.825 | 1.114 | 0.445 | 1.29 | 1.241 | 0.653 | 2.097 | 1.147 | 1.7 | 0.88 | 1.708 | 0.717 | 0.62 | 1.185 | 0.599 | 1.269 | 1.124 | 0.248 | 0.285 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_15277
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
5-pJ2_J3_J4
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.460
|
0.436
|
0.007
|
0.583
|
0.112
|
0.124
|
0.147
|
0.079
|
0.080
|
0.029
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004106
|
2.000
|
1.000
|
Hsc_gene_3715.t1
|
Hsc_gene_3715.t1;Hsc_gene_3720.t1
|
— |
P46550.1 T-complex protein 1 subunit zeta [Caenorhabditis elegans]
|
KAI1724842.1 TCP-1/cpn60 chaperonin family domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005524|GO:0006457|GO:0016887|GO:0051082|GO:0140662
|
GO:0005575_0.865|GO:0110165_0.853|GO:0005622_0.809|GO:0005737_0.743|GO:0008150_0.549|GO:0005829_0.538
|
IPR002194+35-47_56-72+|IPR002423+30-277+|IPR017998+10-277_32-48_54-72_84-103+|IPR027409+205-277_210-285+|IPR027410+141-209_144-212+|IPR027413+12-140_23-140+
|
— |
PF00118+30-277+TCP-1/cpn60_chaperonin_family
|
G3DSA:1.10.560.10:FF:000058+23-139+T-complex_protein_1_subunit_zeta
|
PTHR11353+10-277+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-310
|
8sht_z
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.673
|
34608.730
|
6.440
|
-0.500
|
29.677
|
8.065
|
50.000
|
50.000
|
15.806
|
13.871
|
47.097
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
grey
|
1496.443
|
1796.992
|
1558.321
|
2930.465
|
3238.222
|
2606.319
|
1671.642
|
1169.160
|
497.797
|
559.422
|
533.011
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.435
|
0.568
|
1.020
|
0.112
|
-0.298
|
-0.630
|
-1.264
|
0.660
|
— | — | — | — |
7.641
|
No JSON data available for plots.