Hg_chrom8_TN10mRNA_16168
Organism: Heterodera glycines Gene Locus: chr8:7371010-7376555 Feature type: polypeptideProtein Sequence
Length: 880
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.899 | 0.793 | 0.702 | 0.313 | 1.837 | 2.593 | 0.244 | 1.42 | 1.086 | 1.413 | 1.429 | 1.203 | 0.915 | 0.546 | 1.6 | 0.731 | 0.577 | 0.706 | 0.612 | 0.936 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_15278
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
14-Not_described
|
0.976
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— |
KRIR,PKKAK,KKLQEENKENERRRKLN,RRKRIELYKETNEQVKREK,RKRIELYKETNEQVKREKL,RREELKKLQEENKENERRR,NKTLKDRAERRKEQRKKEA
|
— | — | — | — | — | — |
0.000
|
— | — |
0.556
|
0.137
|
0.005
|
0.584
|
0.087
|
0.084
|
0.129
|
0.014
|
0.103
|
0.050
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004823
|
1.000
|
2.000
|
Hsc_gene_3721.t1;Hsc_gene_3721.t2
|
Hsc_gene_3716.t1;Hsc_gene_3721.t1;Hsc_gene_3721.t2
|
— |
A8PKH2.1 Eukaryotic translation initiation factor 3 subunit A [Brugia malayi]
|
KAF7639541.1 Eukaryotic translation initiation factor 3 subunit A [Meloidogyne graminicola]
|
No
|
-0.220
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005852
|
GO:0005575_0.831|GO:0110165_0.829|GO:0005622_0.809|GO:0008150_0.803|GO:0043226_0.647|GO:0009987_0.623|GO:0005737_0.575|GO:0043229_0.540
|
IPR000717+322-504_431-500_432-517+|IPR027512+7-867+
|
SM00088+432-517+
|
PF01399+431-500+PCI_domain|PF22591+11-409+eIF3a,_PCI_domain,_TPR-like_region
|
G3DSA:4.10.860.10:FF:000001+218-270+Eukaryotic_translation_initiation_factor_3_subunit_A
|
PTHR14005+7-867+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-2;581-637;760-880
|
2.000
|
3-580;638-759
|
6zon_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.541
|
104134.950
|
9.636
|
33.500
|
35.000
|
10.114
|
57.159
|
42.841
|
20.114
|
14.886
|
34.091
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
tan
|
6151.505
|
11841.487
|
4822.449
|
7549.040
|
8440.834
|
6990.121
|
4981.876
|
5148.605
|
6660.079
|
3252.372
|
4712.818
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.526
|
-0.786
|
0.755
|
0.129
|
-0.257
|
-0.478
|
-0.542
|
— | — | — |
1.536
|
— | — |
No JSON data available for plots.